Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi9g706 | ATGGCTGGAAAACAACAACAGCGATACCGGGGCGTCCGCCAGAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGCCATCCTTTACTGAAGACTAGAATATGGCTAGGCACGTTCGAAACGGCTGAGGACGCGGCACGAGCATATGATGAAGCAGCCAGGCTCATGTGTGGGCCAAGAGCTCGCACCAACTTCAGTTACAATCCCAACGACTCACAATCATCTTCGTCTAGGCTTCTCTCGGCGACTTTAACTGCTAAATTGCATAGATGCTACATGGCATCACTTCAAGCGGCCAAAGAGCCTTTAGCTACACACCTCCAACAACCTCACTACTCTCCAAATTTCGCCACAGACGGCAATGCCGGAAATAGCCGCCAAGTGGATGTCGGGTCACCAGCGAAGAGACGGCGACAAGTGCAGGGCAAAAGGGTTGGTGGGGAAGACGAGGAATTCAAGGTTCTTGAAGATGATCATATTGAGCAGATGATCGAGGAGTTGCTTCATTCTGGGTCTGTCGAGCTTAATTAG | 528 | 51.14 | MAGKQQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFSYNPNDSQSSSSRLLSATLTAKLHRCYMASLQAAKEPLATHLQQPHYSPNFATDGNAGNSRQVDVGSPAKRRRQVQGKRVGGEDEEFKVLEDDHIEQMIEELLHSGSVELN* | 176 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 10752759 | 10753553 | - | Vvi9g706 | Vvi9g706 | 792417 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi9g706 | 175 | Pfam | AP2 domain | 8 | 57 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi9g706 | 175 | Gene3D | AP2/ERF domain | 7 | 66 | IPR036955 | GO:0003700|GO:0006355 | |
Vvi9g706 | 175 | SMART | rav1_2 | 8 | 71 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi9g706 | 175 | MobiDBLite | consensus disorder prediction | 109 | 150 | - | - | |
Vvi9g706 | 175 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 4 | 174 | - | - | |
Vvi9g706 | 175 | PRINTS | Ethylene responsive element binding protein signature | 9 | 20 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi9g706 | 175 | PRINTS | Ethylene responsive element binding protein signature | 31 | 47 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi9g706 | 175 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 | 4 | 174 | - | - | |
Vvi9g706 | 175 | MobiDBLite | consensus disorder prediction | 109 | 127 | - | - | |
Vvi9g706 | 175 | CDD | AP2 | 7 | 64 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi9g706 | 175 | SUPERFAMILY | DNA-binding domain | 8 | 66 | IPR016177 | GO:0003677 | |
Vvi9g706 | 175 | ProSiteProfiles | AP2/ERF domain profile. | 8 | 65 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15245 | PF00847 | AP2 | 6.90E-12 | CL0081 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi9g706 | - | - | vvi:100261023 | 331.257 |