Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g706 ATGGCTGGAAAACAACAACAGCGATACCGGGGCGTCCGCCAGAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGCCATCCTTTACTGAAGACTAGAATATGGCTAGGCACGTTCGAAACGGCTGAGGACGCGGCACGAGCATATGATGAAGCAGCCAGGCTCATGTGTGGGCCAAGAGCTCGCACCAACTTCAGTTACAATCCCAACGACTCACAATCATCTTCGTCTAGGCTTCTCTCGGCGACTTTAACTGCTAAATTGCATAGATGCTACATGGCATCACTTCAAGCGGCCAAAGAGCCTTTAGCTACACACCTCCAACAACCTCACTACTCTCCAAATTTCGCCACAGACGGCAATGCCGGAAATAGCCGCCAAGTGGATGTCGGGTCACCAGCGAAGAGACGGCGACAAGTGCAGGGCAAAAGGGTTGGTGGGGAAGACGAGGAATTCAAGGTTCTTGAAGATGATCATATTGAGCAGATGATCGAGGAGTTGCTTCATTCTGGGTCTGTCGAGCTTAATTAG 528 51.14 MAGKQQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFSYNPNDSQSSSSRLLSATLTAKLHRCYMASLQAAKEPLATHLQQPHYSPNFATDGNAGNSRQVDVGSPAKRRRQVQGKRVGGEDEEFKVLEDDHIEQMIEELLHSGSVELN* 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10752759 10753553 - Vvi9g706 Vvi9g706 792417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g706 175 Pfam AP2 domain 8 57 IPR001471 GO:0003700|GO:0006355
Vvi9g706 175 Gene3D AP2/ERF domain 7 66 IPR036955 GO:0003700|GO:0006355
Vvi9g706 175 SMART rav1_2 8 71 IPR001471 GO:0003700|GO:0006355
Vvi9g706 175 MobiDBLite consensus disorder prediction 109 150 - -
Vvi9g706 175 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 174 - -
Vvi9g706 175 PRINTS Ethylene responsive element binding protein signature 9 20 IPR001471 GO:0003700|GO:0006355
Vvi9g706 175 PRINTS Ethylene responsive element binding protein signature 31 47 IPR001471 GO:0003700|GO:0006355
Vvi9g706 175 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 4 174 - -
Vvi9g706 175 MobiDBLite consensus disorder prediction 109 127 - -
Vvi9g706 175 CDD AP2 7 64 IPR001471 GO:0003700|GO:0006355
Vvi9g706 175 SUPERFAMILY DNA-binding domain 8 66 IPR016177 GO:0003677
Vvi9g706 175 ProSiteProfiles AP2/ERF domain profile. 8 65 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi9g706 Vvi11g472 ECH
Vvi4g478 Vvi9g706 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15245 PF00847 AP2 6.90E-12 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g706 - - vvi:100261023 331.257