Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g707 ATGGCTGGACAACAACAGCGTTATCGAGGCGTCCGACAGAGGCATTGGGGCTCTTGGGTCTCTGAAATCCGCCACCCCCAACTGAAGACTAGAATATGGCTCGGCACATTCGAAACGGCGGAGGATGCGGCGCGAGCCTACGACGAAGCAGCCAGGCTCATGTGTGGGCCAAGAGCTCGGACCAACTTCACTTACAATTCCGATGACTCACAATCATCTTCTTCTAAGCTTCTCTCAGCAACTCTCACTGCTAAATTGCAGAGGTGCTACATGGCATCACCTCAAGGGGCCAAAATCCCTTTAGCTACAGATTTCCAACAACCTCACTACTCTCCAAATTTTGGCACAGAATTCAAAGTTCTTGAAGATGATCACATTGAGCAGATGATTGAGGAGTTGCTTCATTCTGGATCTATTGAGCTTGGTTTTGTGTAA 435 48.74 MAGQQQRYRGVRQRHWGSWVSEIRHPQLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFTYNSDDSQSSSSKLLSATLTAKLQRCYMASPQGAKIPLATDFQQPHYSPNFGTEFKVLEDDHIEQMIEELLHSGSIELGFV* 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10792004 10792827 - Vvi9g707 Vvi9g707 792418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g707 144 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Vvi9g707 144 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 109 142 - -
Vvi9g707 144 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 1 101 - -
Vvi9g707 144 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Vvi9g707 144 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Vvi9g707 144 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Vvi9g707 144 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Vvi9g707 144 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Vvi9g707 144 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 109 142 - -
Vvi9g707 144 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 101 - -
Vvi9g707 144 CDD AP2 6 63 IPR001471 GO:0003700|GO:0006355
Vvi9g707 144 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g429 Vvi9g707 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15246 PF00847 AP2 1.20E-12 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g707 - - vvi:100255943 244.588