Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g772 ATGGACACAGACCATGATGTTCCATCAGCCCCCTCAACACCTGTAACTCCATCCACACCTGGGGCTCCTCTCTTTCATGGGTTCAAGGCACACGGAACCAGTAGTGGCAATGGTAGAAGATCTTTTCTCAGGAGCTGCAAGTGCTTCAGTGTTGAACAGTGGGCCATGGAAGAAGGCAGCTTGCCTACTCTCTCTTGCTCATGGCCTACTCCACCACTTCCTGTCTCACTTGCCAGAAAGATGGGAGCTGAGTTCATAGGCACCTTCATGCTGATTTTTGGAGGGGCAGCCACAGGAATTGTGAACCAAAAGACACAAGGCTCCGAGACCCTCCTGGGGCTGGCAGCCTCCACCGGGCTGGCGGTGATGGTCATAATACTCTCTACCGGTCACATCTCAGGCGCCCACCTCAACCCTGCTGTGACCATTGCCTTTGCTGCGCTAAGGCACTTCCCATGGAAGCACGTCCCAGTCTACATAGGATCACAATTGATGGGATCATTGTGTGCTGCATTTGCACTGAAAGGGATATTCAACCCAGTAATGGATGGAGGCGTGACGGTTCCTTCTCATTCAGGGGCGTACGGTCAGGCTTTCGCTTTGGAGTTCATCATTTCCTTCTTCCTCATGTTTGTTGTCACTGCTGTCGCCACCGACACCAGAGCAGTGGGATCGCTGGCGGGCATCGCGGTGGGAGGCACTGTCATGCTCAATATTCTCATCGCCGGGGAAACCACTGGAGCATCCATGAACCCAGTGAGAACACTGGGGCCAGCCATAGCTGTAAACAACTTCAAAGCCATATGGGTTTACCTCACTGCACCCATCCTTGGAGCTCTGTGTGGGGCAGGTGTCTACACAGCCGTGAAGCTTCCAGAGGAAGATGGTAACACTCACTCTCTCAACAAGTCCATGACGGTGCAGAGCGAAGGTGACCAGTCAATGTCATCTGTAGGCCTACAACATAAATTCAGAAACTTCACTAGAAAGGTAAGGCAGTTCTTTGAAGAGATCAGAAACAACAGCCCAATGGATCGAGATCCGGCCAGTACATACAATACATAG 1065 52.02 MDTDHDVPSAPSTPVTPSTPGAPLFHGFKAHGTSSGNGRRSFLRSCKCFSVEQWAMEEGSLPTLSCSWPTPPLPVSLARKMGAEFIGTFMLIFGGAATGIVNQKTQGSETLLGLAASTGLAVMVIILSTGHISGAHLNPAVTIAFAALRHFPWKHVPVYIGSQLMGSLCAAFALKGIFNPVMDGGVTVPSHSGAYGQAFALEFIISFFLMFVVTAVATDTRAVGSLAGIAVGGTVMLNILIAGETTGASMNPVRTLGPAIAVNNFKAIWVYLTAPILGALCGAGVYTAVKLPEEDGNTHSLNKSMTVQSEGDQSMSSVGLQHKFRNFTRKVRQFFEEIRNNSPMDRDPASTYNT* 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13012089 13014631 + Vvi9g772 Vvi9g772 792483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g772 354 CDD MIP 79 286 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi9g772 354 PRINTS Major intrinsic protein family signature 79 98 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi9g772 354 PRINTS Major intrinsic protein family signature 118 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi9g772 354 PRINTS Major intrinsic protein family signature 155 174 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi9g772 354 PRINTS Major intrinsic protein family signature 201 219 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi9g772 354 PRINTS Major intrinsic protein family signature 232 254 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi9g772 354 PRINTS Major intrinsic protein family signature 269 289 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi9g772 354 PANTHER AQUAPORIN NIP6-1 4 308 - -
Vvi9g772 354 SUPERFAMILY Aquaporin-like 75 295 IPR023271 -
Vvi9g772 354 TIGRFAM MIP: MIP family channel proteins 83 286 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi9g772 354 ProSitePatterns MIP family signature. 136 144 IPR022357 -
Vvi9g772 354 MobiDBLite consensus disorder prediction 1 27 - -
Vvi9g772 354 Pfam Major intrinsic protein 76 286 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi9g772 354 Gene3D Glycerol uptake facilitator protein. 70 300 IPR023271 -
Vvi9g772 354 PANTHER AQUAPORIN NIP2-1 4 308 IPR034294 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g772 K09874 - vvi:100258460 690.263