Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g780 ATGGCTTCCACGCCGGTGCAACCACAGTTCATTGCAAGCACTGGGAATAGAAGTTTATCAAATGCGCTACTCATCGAGAATCCCGAATCTGATCAGATTGTTGTGCCTGATAGGAAAAGCTGGAAAAACTTATTTGCATATATGGGTCCTGGGTTTCTTGTGTCTATTGCATATATTGATCCTGGAAATTTTGAGACTGATCTCCAATCAGGAGCACAGTACAAGTATGAGTTACTTTGGATCATATTAGTGGCCTCATGTGCTGCCCTCATTATTCAATCCTTAGCAGCCAACCTGGGGGTAGTAACAGGAAAGCATTTAGCAGAGCACTGCAGAATTGAATATCCAAAGGTGCCTAACTTCATCCTATGGGTTCTTGCTGAAATTGCTGTAGTTGCATGTGACATTCCTGAAGTGATTGGAACAGCCTTTGCATTGAACATGCTCTTCAATATTCCTGTGTGGTGTGGTGTTCTTCTTACAGGGCTTAGTACATTGGTTCTTCTAGCTTTACAGCAATATGGGGTTAGAAAACTTGAATTCTTTATTGCTTTTCTCGTACTTACAATTGCTGCATGCTTCTTTGTGGAGCTTGGCTATGCAAAACCCAATTCTTCAGAAGTCTTGCGTGGACTCTTTGTTCCACAACTCAAAGGAAATGGTGCTACTGGTCTTGCAATTTCCCTCCTTGGTGCTATGGTTATGCCGCACAATCTCTTCCTTCACTCAGCATTGGTGCTTTCCAGGAAAATACCACGATCTGTTCGTGGCATCAAAGAGGCTTGCAGATTTTATATGATAGAAAGTGGCTTTGCTCTTATGGTGGCATTTCTCATTAATGTCTCTGTTATATGTGTAAGCGGTGCAGTTTGCAGTTCCTCAAATTTGAACCTGGATGATCAGGAGAGTTGCAAAGATTTGGACCTGAACAAAGCCTCATTTTTACTCAGAAATGTATTAGGCAAATGGAGCTCAAAGCTTTTTGCTATTGCTTTGCTAGCATCTGGTCAGAGTTCTACGATCACGGGAACATATGCAGGGCAATATGTAATGCAGGGCTTTCTTGATTTACGTCTACAACCATGGATCCGGAATTTTTTAACTCGATGCTTGGCAATAATCCCAAGTTTAATTGTTGCAATTATTGGTGGCTCGTCTGGGGCTGGAAAGCTGATTATCATTGCATCTATGATCTTATCATTTGAACTCCCTTTTGCTCTCATTCCACTTCTCAAGTTCACCAGCTGCAAGACTAAGATGGGTGCATATGTCAATTCGACCATGATTACAGCCATCACTTGGATCATCGGTTCCCTTCTCATGGCCATAAATATATACTATCTTGCATCCAGTTTCATCAAGTTGCTTCTTCACAGCCATTTAAAGCTGGTGGCTGCCGTGTTTGCTGGAATAATTGGATTTTCAGGTATGATAGTGTATGTGTGTGGTATTGGATACCTGGTGTTCCGAAAAAATAAGAAGGCTACACACCTTTTGGCATTAGCAACAGCAGAAAATGGAGAGCTGACAAATGATGTAGGTGGTGCATCAATGGATTGCCTCCCAAGAGAAGACATAGTTAGCATGCAGTTGCCTCAGAGAAGGGTTACGGTAGATGTTGACTGA 1626 42.13 MASTPVQPQFIASTGNRSLSNALLIENPESDQIVVPDRKSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRIEYPKVPNFILWVLAEIAVVACDIPEVIGTAFALNMLFNIPVWCGVLLTGLSTLVLLALQQYGVRKLEFFIAFLVLTIAACFFVELGYAKPNSSEVLRGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGIKEACRFYMIESGFALMVAFLINVSVICVSGAVCSSSNLNLDDQESCKDLDLNKASFLLRNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLQPWIRNFLTRCLAIIPSLIVAIIGGSSGAGKLIIIASMILSFELPFALIPLLKFTSCKTKMGAYVNSTMITAITWIIGSLLMAINIYYLASSFIKLLLHSHLKLVAAVFAGIIGFSGMIVYVCGIGYLVFRKNKKATHLLALATAENGELTNDVGGASMDCLPREDIVSMQLPQRRVTVDVD* 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13242473 13257290 + Vvi9g780 Vvi9g780 792491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g780 541 PANTHER METAL TRANSPORTER NRAMP1 9 541 - -
Vvi9g780 541 Pfam Natural resistance-associated macrophage protein 64 426 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi9g780 541 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 43 420 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi9g780 541 Hamap Divalent metal cation transporter MntH [mntH]. 36 452 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi9g780 541 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 9 541 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi9g780 541 PRINTS Natural resistance-associated macrophage protein signature 123 149 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi9g780 541 PRINTS Natural resistance-associated macrophage protein signature 151 170 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi9g780 541 PRINTS Natural resistance-associated macrophage protein signature 176 197 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi9g780 541 PRINTS Natural resistance-associated macrophage protein signature 226 249 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi9g780 541 PRINTS Natural resistance-associated macrophage protein signature 336 355 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi9g780 541 PRINTS Natural resistance-associated macrophage protein signature 364 381 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi9g780 541 PRINTS Natural resistance-associated macrophage protein signature 396 415 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g780 K21398 - vvi:100256746 1023.08