Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g847 ATGGCTATGGATAGTTCTAATTGGATGGCCGCTTCATTGGATCTTAATGCTAATCCTCTTCGGCTTTTCGATGATACTCCGAAGAAGGAGGTGCAGGATGATTTTACAGGGTTGGGGTTGAAGGTCGTCTCATTGAAAGAAGAAGAGACAGGTGTTCTTGTGGAGAAATTGAACCAAGTGAACGCAGAAAACAGGAAGCTAACGGAAATGCTAACAGTGATGTGTGAGAATTACAACGCTTTGAGAAGCCATGTGATGGAGTATATCAGCAAGAACCCCGAGAGGGAATCTCCTTCATCAAGAAAAAGGAAGGCAGAGAGCAGCAATAATAACAGTAACAACAATGGAGTCGTTGGGAACTCAGAAAGCAGCTCAAGCGATGAAGATTCATTCAAGAAACCAAGGGAGGAGACTATTAAGGCCAAAATCTCAAGGGTCTATACGCGAACCGATGCATCAGATACCAGCCTTGTGGTGAAGGATGGATACCAGTGGAGGAAATATGGCCAAAAGGTCACCAGAGACAACCCCTCTCCGAGAGCCTACTTCAAATGCTCTTTTGCTCCTAGCTGCCCTGTCAAGAAGAAGGTGCAAAGAAGTGTTGAAGATCAATCTATATTGGTAGCAACCTACGAAGGCGAGCATAATCATCCACACCCTGGTCGAATTGAGCCCACATCAGGTGCAAACCGATCCGCTTCAAAGTCCCCTGAACTTCATCACTTCTTGGTGGAACAGATGGCCTCTTCGTTGACCAAAGATCCAAGCTTCAAGGCTGCACTTGCAGCCGCCATTTCAGGAAGAATTCTCCACCATAATCAAACTGAAAAATGGTGA 837 45.64 MAMDSSNWMAASLDLNANPLRLFDDTPKKEVQDDFTGLGLKVVSLKEEETGVLVEKLNQVNAENRKLTEMLTVMCENYNALRSHVMEYISKNPERESPSSRKRKAESSNNNSNNNGVVGNSESSSSDEDSFKKPREETIKAKISRVYTRTDASDTSLVVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSILVATYEGEHNHPHPGRIEPTSGANRSASKSPELHHFLVEQMASSLTKDPSFKAALAAAISGRILHHNQTEKW* 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 16094218 16096253 + Vvi9g847 Vvi9g847 792558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g847 278 PANTHER TRANSCRIPTION FACTOR 3 235 - -
Vvi9g847 278 PANTHER TRANSCRIPTION FACTOR 235 273 - -
Vvi9g847 278 SMART WRKY_cls 159 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi9g847 278 MobiDBLite consensus disorder prediction 213 234 - -
Vvi9g847 278 MobiDBLite consensus disorder prediction 104 125 - -
Vvi9g847 278 MobiDBLite consensus disorder prediction 90 136 - -
Vvi9g847 278 Gene3D WRKY domain 143 221 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi9g847 278 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 3 235 IPR044810 GO:0003700
Vvi9g847 278 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 235 273 IPR044810 GO:0003700
Vvi9g847 278 SUPERFAMILY WRKY DNA-binding domain 156 220 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi9g847 278 Pfam WRKY DNA -binding domain 160 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi9g847 278 ProSiteProfiles WRKY domain profile. 154 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g508 Vvi9g847 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15249 PF03106 WRKY 1.70E-23 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g847 - - vvi:100253480 485.723