Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g859 ATGTTCGATTGTGGTTACAAGTCACAGTATATTGGTGGCCAAAGAGAGAAATTTGTAAGGTTGGATGACCTGGATTCAACATTGTCAGTGCCGTCTGACGGTATGAATAGATGTGCATTTAGTTTAGCAGGACTGACCCCTTGGGGTCGTCCTAACCGCCATTCCTCCAAATCCTTCAGAATAGGAGTGAAAAGGGGTTCTGAAGGGCTCAGGCATATTGGTCGACAACTTAGATCTGAAATAACGAAGGCAATGTTCCCGGAAGATCTTAAAGTATCTGAGAAAAAGATATTTGACCCTCAAGACAAATCCCTCCTACTCTGGAATAGGCTTTTCGTCATATCATGTATTCTTGCTGTATCTGTGGATCCTTTGTTCTTTTATCTTCCTATTGTCGATCACCAATCAAGTTGCCTTGGCATAGATCCCAACTTAGCTGTCACAACTACAACTGTTCGTACGATAATTGATGCTTTCTACCTTATTCGCATGGCTTTCCAATTTCGCACAGCTTATATTGCACCATCATCTAGAGTTTTTGGAAGGGGAGAACTTGTGATAGATCCTGCGGAAATAGCTAAGCGATATTTACAGCGGTTTTTCTTCATTGATTTTCTTGCTGTGTTTCCCCTGCCACAGATTATAGTTTGGAAATTTCTCCGCAAGGGAGAAGGCTTGGAGGTGTTGGAAACTAAACAGCAGCTACTTGTTGTTGTCTTTCTTCAATATATTCCCAGATTTGTCCGGTTTATACCTCTAACTTCAGAACTAAAAAGGACTGCAGGTGTCTTTGCTGAAACTGCTTGGGCTGGTGCTGCATACTACTTGCTGTGGTACATGCTTGCCAGTCATATTCTTGGAGCTTTTTGGTACTTATTTGCTGTAGAACGCTATGATGCATGCTGGCATAAAGCCTGTGTTGAGAGTGGGAAATGTGAGGTTAATTTTTTGTACTGTGGGAATCAGCATATGAAAGGTTATGGTGCTTGGCAAAATATCAGCAAGACTGTTATTGGTATGATGTGTTCCCTTAATGATGACAATCCACCATTCAATTATGGAATCTACACCCAGGCTCTAAGTTCCGATATTATTGCCTCTGAGAGTTTCTTTACTAAATATTGTTACTGTTTATGGTGGGGCCTACAAAATTTGAGTACACTTGGACAGGGGCTACAAACCAGTACTTATGCTGGAGAGGTTTTGTTTTCAATAACACTAGCTATTTTGGGGCTTATCCTTATGGCACTACTGATTGGAAACATGCAGACCTATCTTCAATCCCTGACTGTTCGGCTGGAGGAGATGAGGATTAAAAGGCGCGACTCGGAGCAGTGGATGCATCATCGCATGCTTCCTCAAGGGTTGAGGGAACGAGTAAGACGGTATGATCAATACAAGTGGTTGGAAACAAGGGGAGTGGATGAGGAGAGCTTGGTCCAGACTCTACCCAAAGACCTCAGGAGGGATATTAAACGCCATCTCTGTCTCAACTTGGTTAGAAGGGTTCCTCTGTTTGCAAATATGGATGAAAGATTGCTTGATGCCATTTGTGAGAGGCTGCAACCGAGTTTATTCACGGAAAAAACTTACATAGTGCGGGAAGGGGACCCAGTAGACGAGATGCTCTTCATCATACGCGGTCGCCTTGAGAGTGTGACTACAGATGGTGGGAGGAGTGGGTTTTTTAACCGAGGCCTACTGAAAGAAGGGGACTTCTGCGGAGAGGAGCTTCTAACTTGGGCTCTGGACCCTAAATCTTCTTCCAACTTACCATCATCCACCCGCACGGTGAAGGCTTTGACTGAGGTCGAGGCTTTTGCCTTAACAGCAGAGGAGTTGAAGTTTGTTGCAGGTCAGTTTAGGCGTCTCCATAGTAGACAGGTTCAACAGACCTTCCGTTTCTACTCACAGCAATGGAGGACTTGGGCTGCCTGCTTTATCCAAGCTGCATGGCGTAGGTATTCCCGCAGGAAAATGGCAGAACTCCGGCTTGGGGATGGTGGTGGTTCATCCACCCTTGGTGCAACCATCTTAGCTTCCCGGTTTGCAGCTAATGCTCTTCGTGGCATCCAGAGGTTCCGGAGCAGCAGTTCTACAGAGTTGTTTAAACTGCAGAAGCCTCCAGAACCTGACTTCACCATTGAAGACACTGACTGA 2160 44.91 MFDCGYKSQYIGGQREKFVRLDDLDSTLSVPSDGMNRCAFSLAGLTPWGRPNRHSSKSFRIGVKRGSEGLRHIGRQLRSEITKAMFPEDLKVSEKKIFDPQDKSLLLWNRLFVISCILAVSVDPLFFYLPIVDHQSSCLGIDPNLAVTTTTVRTIIDAFYLIRMAFQFRTAYIAPSSRVFGRGELVIDPAEIAKRYLQRFFFIDFLAVFPLPQIIVWKFLRKGEGLEVLETKQQLLVVVFLQYIPRFVRFIPLTSELKRTAGVFAETAWAGAAYYLLWYMLASHILGAFWYLFAVERYDACWHKACVESGKCEVNFLYCGNQHMKGYGAWQNISKTVIGMMCSLNDDNPPFNYGIYTQALSSDIIASESFFTKYCYCLWWGLQNLSTLGQGLQTSTYAGEVLFSITLAILGLILMALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRMLPQGLRERVRRYDQYKWLETRGVDEESLVQTLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLQPSLFTEKTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKSSSNLPSSTRTVKALTEVEAFALTAEELKFVAGQFRRLHSRQVQQTFRFYSQQWRTWAACFIQAAWRRYSRRKMAELRLGDGGGSSTLGATILASRFAANALRGIQRFRSSSSTELFKLQKPPEPDFTIEDTD* 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 16472079 16483517 - Vvi9g859 Vvi9g859 792570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g859 719 SUPERFAMILY Voltage-gated potassium channels 100 427 - -
Vvi9g859 719 SMART cnmp_10 505 633 IPR000595 -
Vvi9g859 719 Pfam Ion transport protein 107 432 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi9g859 719 Gene3D Helix hairpin bin 432 496 - -
Vvi9g859 719 Gene3D Jelly Rolls 503 623 IPR014710 -
Vvi9g859 719 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 12 666 - -
Vvi9g859 719 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 672 716 - -
Vvi9g859 719 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 12 666 - -
Vvi9g859 719 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 672 716 - -
Vvi9g859 719 Pfam Cyclic nucleotide-binding domain 526 615 IPR000595 -
Vvi9g859 719 SUPERFAMILY cAMP-binding domain-like 435 625 IPR018490 -
Vvi9g859 719 CDD CAP_ED 505 636 IPR000595 -
Vvi9g859 719 Gene3D - 111 430 - -
Vvi9g859 719 ProSiteProfiles cAMP/cGMP binding motif profile. 505 635 IPR000595 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g859 K05391 - vvi:100241716 1416.75