Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g902 ATGGTAGTTTTAAGGATATTTTTGACTGTGGACTTATCAAAGAACAATCTGACGGGGAAGATTCCCTTGCATGTTGGGCATATGACCAGACTGCTAGTTCTGCGGCTTCGATTGAATCAGTTTACTGGAATAATTCCAGATACACTATCCAATATTTCAGGACTTGAACTTTTGGATCTAAGTGGGAATTTTCTCACTGGGCAAGTCCCTGATAGCTTAGGAATGCTCAAGGATCTGGTCACAGCCTTGAGGTTGGAGGGTCAAAGCTTAGGTGGTTCCTTACCTCCTATTGGGAACTTAACATTCCTAAGAGAGTTGGTGTTGTCCAACAATCTCTTGCACGGTACCATCCCCAGTGACATTGGTCTTTTGCGACGAATGCGGCATCTCAATCTCAGCACAAATTCTCTCCAAGGCGAGATTCCCATTGAGCTGACCAACTGTTCAAACCTCGAGACTGTGGACTTAACAAGGAACAATCTGACAGGGCAGATTCCCTTTCGTGTTGGCAATATGTCGACCAAACTCCTAAGCTTGAAAATTCTATATTTAAGTGTAAACAACCTATCTGGTACGATTCCTCCCTCCCTCTATAATTTTTTTCCTCAACTCCGCAAGTTGGGCATAGCATTGAATCAGACAATCAGTCTCTACCAAAATAACTTTGGGGGTGTGTTACCCAACTCCATTGTCAATCTCTCAACCCAACTGCAGGCCCTCCACCTAGGAGAGAACAAAATATTTGGAAACATCCCAGAAGAAATTGGAAACCTCATCAACTTAACTACTTTCGATGCAGGTCAGAATTATCTCACTGGTGTCGTTCCCACTTCAGTTGGCAAGCTTCAGAAGTTAGTAACATTGAGGTTAAGTTGGAACAGGCTATCAGGTCTGCTCCCATCCTCCCTCGGAAACTTAAGTCAACTATCACTCTACCTACAGCAAAACACATTCACCGGTTCTCTTCCAGCAGATGTTGGTCAACTGAAGAACCTAAATGATTTAAATCTGTCTTATAACTACCTTGAAGGTGAGGTTCCAATTTTTGAACAAAGATTAGATATTGCAATTGATGTGGCTTGTGCTCTGGATTATCTTCATCACCATTGCCAGACACCAATTGTTCATGGGGATCTAAAGCCAAGCAATGTTCTTCTTGATGACAACATGGTTGCCCATGTTGGGGACTTTGGTTTAACCAAGCTCATTCCTGAAGCCACCGAGATTTCAAGTAGTGATCATCAAACCGGTTCAGCGCTGCTGATGGGATCCATCGGTTATGTGGCTCCAGAATATGGACTAGGTGGCTCCATGTGGCCTCAAGGAGATATGTACAGCTATGGCATCCTTTTGCTGGAGATGTTCACGGGAAAGAGACCAACAGATCACATGTTTTCGGATGGTTTGAACCTTCACAGTTTTTCGAAGATGGCATTGCTTGAACGGGTGATGGAGATTGCCGATTCAAATTTGGTCGGGGAAACGCAGCATTGCCTTGCTTCAATTGCCAGAATTGGAGTAGCATGTTCTGAAGAATCACCTGGTGATCGATTGGACATCAAGGATGTGGTGATGGAACTGAATATCATTAAGAAAGTGTTTCTTGGGGCAGGAATCCATGGGGAGAGACATATCAGGATGCAACTACCTGCGGAAGGAACATCTCAGCTCGGTGGTGAGTCACTGGTGACTGAAGAGGAAGATGACCAACGTACAGTAGGGAAGCTATGA 1731 44.19 MVVLRIFLTVDLSKNNLTGKIPLHVGHMTRLLVLRLRLNQFTGIIPDTLSNISGLELLDLSGNFLTGQVPDSLGMLKDLVTALRLEGQSLGGSLPPIGNLTFLRELVLSNNLLHGTIPSDIGLLRRMRHLNLSTNSLQGEIPIELTNCSNLETVDLTRNNLTGQIPFRVGNMSTKLLSLKILYLSVNNLSGTIPPSLYNFFPQLRKLGIALNQTISLYQNNFGGVLPNSIVNLSTQLQALHLGENKIFGNIPEEIGNLINLTTFDAGQNYLTGVVPTSVGKLQKLVTLRLSWNRLSGLLPSSLGNLSQLSLYLQQNTFTGSLPADVGQLKNLNDLNLSYNYLEGEVPIFEQRLDIAIDVACALDYLHHHCQTPIVHGDLKPSNVLLDDNMVAHVGDFGLTKLIPEATEISSSDHQTGSALLMGSIGYVAPEYGLGGSMWPQGDMYSYGILLLEMFTGKRPTDHMFSDGLNLHSFSKMALLERVMEIADSNLVGETQHCLASIARIGVACSEESPGDRLDIKDVVMELNIIKKVFLGAGIHGERHIRMQLPAEGTSQLGGESLVTEEEDDQRTVGKL* 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 17758711 17766637 + Vvi9g902 Vvi9g902 792613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g902 576 SMART LRR_typ_2 28 51 IPR003591 -
Vvi9g902 576 SMART LRR_typ_2 176 200 IPR003591 -
Vvi9g902 576 SMART LRR_typ_2 282 305 IPR003591 -
Vvi9g902 576 SMART LRR_typ_2 100 124 IPR003591 -
Vvi9g902 576 SMART LRR_typ_2 329 351 IPR003591 -
Vvi9g902 576 Gene3D Ribonuclease Inhibitor 81 214 IPR032675 -
Vvi9g902 576 SUPERFAMILY L domain-like 9 214 - -
Vvi9g902 576 SUPERFAMILY Protein kinase-like (PK-like) 349 528 IPR011009 -
Vvi9g902 576 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 10 79 - -
Vvi9g902 576 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 254 347 - -
Vvi9g902 576 ProSiteProfiles Protein kinase domain profile. 211 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g902 576 SMART serkin_6 270 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g902 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 374 386 IPR008271 GO:0004672|GO:0006468
Vvi9g902 576 MobiDBLite consensus disorder prediction 556 576 - -
Vvi9g902 576 Gene3D Transferase(Phosphotransferase) domain 1 339 535 - -
Vvi9g902 576 Gene3D Ribonuclease Inhibitor 215 311 IPR032675 -
Vvi9g902 576 Gene3D Ribonuclease Inhibitor 7 80 IPR032675 -
Vvi9g902 576 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 79 271 - -
Vvi9g902 576 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 10 79 - -
Vvi9g902 576 SUPERFAMILY RNI-like 141 345 - -
Vvi9g902 576 Pfam Protein tyrosine and serine/threonine kinase 309 527 IPR001245 GO:0004672|GO:0006468
Vvi9g902 576 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 254 347 - -
Vvi9g902 576 Pfam Leucine Rich Repeat 178 199 IPR001611 GO:0005515
Vvi9g902 576 Pfam Leucine Rich Repeat 284 306 IPR001611 GO:0005515
Vvi9g902 576 Pfam Leucine Rich Repeat 55 73 IPR001611 GO:0005515
Vvi9g902 576 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 349 539 - -
Vvi9g902 576 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 79 271 - -
Vvi9g902 576 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 349 539 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi9g902 Vvi11g1009 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76879 PF07714 PK_Tyr_Ser-Thr 4.60E-22 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g902 - - vvi:100263845 448.358