Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g92 ATGACCATTGAAGAACCTGAGCCTAACCCCACTTCTGATCACATCCTGGATTGGCTGGAGGATTCGGTTTCGTTTCTTCCGTCTTTCTTGGATGATCCCTACGGCTCCGGCGATATCAGCAGCTATCAATGGTGGGATCAGGGCCAGGAGCTGGACCAGGATTTTACTAGTTATACTGATAATTCAATCAACTGCAACTCCGCTGCCGTCGCCGGTGCTGTAACTCCCTGTGATCCTGCGAGTGTTGATCATCTCCAACTGTCTGATTCGTCGAAGAAGAGGAAATCCCCGGATGACCCAGCTCCCAGAGCTACAGGGAATAACTGTAATAACAGTAATAGCAAGGAAGGGAGGTGGGCTGAGCAGCTGCTCAACCCCTGCGCCACCGCCATCACCGCTGGAAATCTATCCCGTGTTCAGCACCTCTTGTATGTCCTCCATGAGCTGGCATCCTCCACCGGCGACGCCAACCACCGGCTGGCTGATCATGGCCTGAGAGCCCTGTCCCACCACCTATCCTCCTCTGTCTCTGTAGGGCCTATCACCTTTTCTTCCACAGAGCCGAGGTTTTTCCAGCGATCCCTTCTCAAATTCTATGAGGTTAGTCCCTGGTTCGCCTTCCCCAACAATATTGCAAATACATCCATCCTGCAAATTCTCAATGGGGTGCCATCCCGCTCGCGAAATCTTCACATCCTTGATATTGGAGTCTCCCATGGTGTGCAATGGCCGACGCTGCTCGAGGCCTTGAGTCGTCGGTCTGGCGGCCCTCCTCCACTGGTTCGCCTCACGGTCATCGCCGCCACCAGTGACAATGATCAGAACACAGAGACCCCATTTTCAATAGCTCCACCAGGGGACAACTTCTCGGCCAGACTCCTCTCCTTTGCCAAGTCCATGAACATCAATCTGCAGATCAACAGGCTTGACAACCACCCATTACAAAGCCTCAGTCCCCAGCTCATCGACACCTCCCCTGATGAAACCCTAATCGTTTGCGCGCAGTTCAGGCTGCACCATCTGAATCACAACACCCCTGATGAAAGAACTGAGTTCTTGAAGGTACTGAGGAAGCTGGAGCCAGAAGCAGTTATTCTAAGTGAAAACAACATGGACTGCAGCTGCACCAACTGCGGGGACTTTGCAACTGGGTTCTCCAGGAGGATAGAGTACTTATGGAAGTTTCTGGATTCGACAAGTGCAGCATTCAAGGGCCGAGAAAGTGAAGAGAGAAGGGTGATGGAAGGAGAAGCTGCCAGGGCATTGACAAACCCAGGAGAGATGAATGAGGGAAAAGAGAAATGGTGTGAGAGAATGCGGGGGGTCGGGTTTGCAGGAGAGGTATTTGGGGAGGACGCCATTGATGGAGCTCGGGCGTTGTTGAAGAAGTACGACAGCAACTGGGAAATGAGAGTAGAAGAGAAAGATGGGTGTGTGGGGTTGTGGTGGAAAGGGCTACCTGTTTCCTTTTGTTCACTCTGGAGGCTGGAGGATACCAAACCAAATAACAGTTAG 1515 52.15 MTIEEPEPNPTSDHILDWLEDSVSFLPSFLDDPYGSGDISSYQWWDQGQELDQDFTSYTDNSINCNSAAVAGAVTPCDPASVDHLQLSDSSKKRKSPDDPAPRATGNNCNNSNSKEGRWAEQLLNPCATAITAGNLSRVQHLLYVLHELASSTGDANHRLADHGLRALSHHLSSSVSVGPITFSSTEPRFFQRSLLKFYEVSPWFAFPNNIANTSILQILNGVPSRSRNLHILDIGVSHGVQWPTLLEALSRRSGGPPPLVRLTVIAATSDNDQNTETPFSIAPPGDNFSARLLSFAKSMNINLQINRLDNHPLQSLSPQLIDTSPDETLIVCAQFRLHHLNHNTPDERTEFLKVLRKLEPEAVILSENNMDCSCTNCGDFATGFSRRIEYLWKFLDSTSAAFKGRESEERRVMEGEAARALTNPGEMNEGKEKWCERMRGVGFAGEVFGEDAIDGARALLKKYDSNWEMRVEEKDGCVGLWWKGLPVSFCSLWRLEDTKPNNS* 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 910681 912319 - Vvi9g92 Vvi9g92 791803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g92 504 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 115 495 IPR005202 -
Vvi9g92 504 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 111 IPR005202 -
Vvi9g92 504 MobiDBLite consensus disorder prediction 82 115 - -
Vvi9g92 504 Pfam GRAS domain family 121 495 IPR005202 -
Vvi9g92 504 PANTHER NODULATION-SIGNALING PATHWAY 1 PROTEIN-LIKE 2 111 IPR030015 -
Vvi9g92 504 PANTHER NODULATION-SIGNALING PATHWAY 1 PROTEIN-LIKE 115 495 IPR030015 -
Vvi9g92 504 ProSiteProfiles GRAS family profile. 111 495 IPR005202 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15251 PF03514 GRAS 1.80E-78 CL0063 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g92 - - vvi:100261706 1005.36