Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g927 ATGGAGAAGAAGAAGTACCCGATCGGCCCGGAGTTCTACACGCTGTACGAGGAGATAGGGCAGGGCGTCAGCGCTTCGGTGCTCCGCGCGCTGTGCGTGCCGCTCAATGAGATCGTCGCCATCAAGATCCTCGACTTTGAGCGGGACAATTGCGATCTTAATAATATTTCTCGTGAAGCGCAAACAATGAATCTGGTTGACCACCCTAACGTTCTTAAATCACACTGCTCATTTGTTAGTGAACACAATTTGTGGGTTGTCATGCCATATATGGCTGGGGGTTCTTGTCTTAACATTTTGAAGGCTGCCTATCCTGATGGTCTAGAGGAGGTAGTTATCGCAACAATCTTACGTGAGGTATTGAAGGGTTTAGAGTATCTTCATCACCATGGGCACATACATCGAGATGTCAAGGCTGGAAATATTCTCATTGATGCACGTGGTGCAATCAAACTGGGAGATTTTGGTGTTTCTGCTTGCCTCTTTGATTCGGGTGATAGGCAGCGTTCAAGGAACACATTTGTGGGGACACCTTGCTGGATGGCCCCTGAGGTTATGGAGCAGTTACATGGTTATGACTTCAAGGCTGATATCTGGTCTTTTGGTATAACTGCATTGGAGCTTGCCCATGGTCATGCTCCTTTCTCAAAATATCCTCCTATGAAGGTCCTGCTTATGACTTTGCAAAATGCTCCCCCTGGCCTTGATTATGAAAGAGATAGAAAATTTTCTAAGTCTTTTAAGCAGATGATTGCAAGTTGCTTGGTAAAAGATCCTTCAAAACGACCTTCTGCAAAAAAGTTGCTAAAGCATCCTTTCTTTAAGCAAGCTAGGTCAAGTGATTATATAGGACGAACACTTTTGGAGGGGCTGCCTGATCTTGGTGAGCGTATTAAAGAATTGAAGAGGAAAGAAGAAGATATGCTTGCACAAAAAAAAATGCCAGATGGGGAAAAGGAGGAGCTATCACAGATACTGAATTTGAATTCTATGAATGAATATAAACGGGGGATTAGTGGTTGGAATTTCAATCTTGAAGATGTAAAGGCTCAGGCTTCCCTGATCCCAGATGTCGAGGATTCTGGGTCTGATTTAGGAGGGAGCTCGAATTCTTTGTCTGGGCTTGATGTGCATGAGAAACAATCCTCTATGGGTCATCTTTCACAAGTTGCAGAGGAAGGTAGTGATTTGATGCAGAATCTGCCAGTTCCTCTTCCATCAGTTGACTCAGCCATTAATAATATCAGAGTTCAATCTTATAAATCTGATGACGAATCGAGCATTGCCAGTTCAAGCCATGAACACCATATTTCACAGGGTTCTTCTCCTCGTCATGATGATCAAATTGAAAATAATTTGGCTGAAAAACCTGATCCAGAAATTAGTGAAAAATTATTGGATATGGCTATTCAATCTCAGAAGGTTGGGAGTTCGTCTGACAGCACCAGTTCACTAGAAGTCAATTGTCCTGTGAAAGGAGAAAGTGGTAACTTGCAAAATCAGCTTAGGAAGATGTCAAGTTGTAATGGAACAACAGTTGTGACAGTAGTAGACGAGGCACCTTCTGAAATAATTTCTAGGACATCCAAATCATCAGCAAACAGTGATGAACCTGATGAGAGAGCAAAGATGCCAGTTGTTCAGCAAAGAGGACGTTTCAAGGTCACATCTGAGAATGTTGACTTAGAAAAGGTGAATTTATGA 1704 42.78 MEKKKYPIGPEFYTLYEEIGQGVSASVLRALCVPLNEIVAIKILDFERDNCDLNNISREAQTMNLVDHPNVLKSHCSFVSEHNLWVVMPYMAGGSCLNILKAAYPDGLEEVVIATILREVLKGLEYLHHHGHIHRDVKAGNILIDARGAIKLGDFGVSACLFDSGDRQRSRNTFVGTPCWMAPEVMEQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDRKFSKSFKQMIASCLVKDPSKRPSAKKLLKHPFFKQARSSDYIGRTLLEGLPDLGERIKELKRKEEDMLAQKKMPDGEKEELSQILNLNSMNEYKRGISGWNFNLEDVKAQASLIPDVEDSGSDLGGSSNSLSGLDVHEKQSSMGHLSQVAEEGSDLMQNLPVPLPSVDSAINNIRVQSYKSDDESSIASSSHEHHISQGSSPRHDDQIENNLAEKPDPEISEKLLDMAIQSQKVGSSSDSTSSLEVNCPVKGESGNLQNQLRKMSSCNGTTVVTVVDEAPSEIISRTSKSSANSDEPDERAKMPVVQQRGRFKVTSENVDLEKVNL* 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 18395009 18410644 - Vvi9g927 Vvi9g927 792638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g927 567 MobiDBLite consensus disorder prediction 357 390 - -
Vvi9g927 567 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Vvi9g927 567 ProSiteProfiles Protein kinase domain profile. 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g927 567 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 565 - -
Vvi9g927 567 MobiDBLite consensus disorder prediction 422 450 - -
Vvi9g927 567 Coils Coil 291 311 - -
Vvi9g927 567 MobiDBLite consensus disorder prediction 524 552 - -
Vvi9g927 567 MobiDBLite consensus disorder prediction 422 437 - -
Vvi9g927 567 Gene3D Transferase(Phosphotransferase) domain 1 94 325 - -
Vvi9g927 567 Pfam Protein kinase domain 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g927 567 MobiDBLite consensus disorder prediction 363 390 - -
Vvi9g927 567 SUPERFAMILY Protein kinase-like (PK-like) 12 275 IPR011009 -
Vvi9g927 567 SMART serkin_6 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g927 567 MobiDBLite consensus disorder prediction 533 547 - -
Vvi9g927 567 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 565 - -
Vvi9g927 567 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Vvi9g927 567 CDD STKc_OSR1_SPAK 13 274 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76881 PF00069 Pkinase 1.40E-61 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g927 K08835 - vvi:100251927 1075.08