Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g941 ATGGCTGGCTTCAAGAAATCTCCATACAATTCACTCTATGTCAACCCCCTCAATGATCTCAAGCATATAAGGAGCTGCAGTGAGGGTGACAAAGAAAATGCAGCCCCAAAAGCCAAAGAAAATGGCAATGCACCACCACCCACCAAGCAGTTTCCATACACAAAGTGCTCCTCCACCACCACCAGGGTCCCCCTGAAGCCATCTTCACTGCAGCTATGCATGCAGCTCAATGAGCCTGATTCAACTTTAGGGTCCAAAGTGTGGTGCCCCATCAGCTCAGAGCCCTTCACTTCCTCCCATGTTTGGGACTATTCAGATTCTGAGGCTGCCCCAGCTTCTTCCTGGTCTACACTGCCCAATAGGTCCTTGCTGTGTAGGCCTTTGCCTTTGGACATTGGGAGATGCACCTGTGTCATCGTGAAGGAGGCATTACCACAAGGGTTGGATGGGGGTGCTCTGTATTCACTTTACACCAATGAAGGCCAAGGGCGACAAGATAGAAAACTAGCTATTGCACATCATAAACGGCGTAATGGAAAGTCTGAGTTCATTGTAGCTCAGAGTGTAAAGGGGATATTATGCAACTCAGATGATAGCTTCATTGGGATAGTAACAGCCAACCTCCTTGGTTCAAAATACCACATATGGGATCAGGGGACTTGCCTCAATTCTGTAGCAAAGCGGTCTAAACCTCTTTTGGCTGTTGTAACATTCATGCCTACAATAGCCACCTTGACAGGAAGTTACAGAAACATACGGGCATGGATACCAAAGCACCAGTCTATGCAGCTGAAGAACTCAACTCAGATACAACATATTAATGGACTGCCCAACGACTGGGAGAGCAAAAAGGACAAAGTTCACCAGCTATTCTCGAGGGTTCCTCATTATAATAGTGTTTCAAAGCAGTATGAGTTAGATTTCAGAGAAAGAGGAAGAGCAGGACTTCGAATCCAAAGCTCAGTGAAGAACTTCCAACTTACTTTGGAGGAGAAAGGAAAGCAGACGATCTTGCAGCTTGGAAGGGTTGGGAAATCAAAGTATGTGATGGATTACAGATATCCTTTGACAGGTTATCAAGCATTCTGCATATGTTTGGCTTCTATAGATTCAAAGCTCTGCTGCACAGTATAA 1134 45.68 MAGFKKSPYNSLYVNPLNDLKHIRSCSEGDKENAAPKAKENGNAPPPTKQFPYTKCSSTTTRVPLKPSSLQLCMQLNEPDSTLGSKVWCPISSEPFTSSHVWDYSDSEAAPASSWSTLPNRSLLCRPLPLDIGRCTCVIVKEALPQGLDGGALYSLYTNEGQGRQDRKLAIAHHKRRNGKSEFIVAQSVKGILCNSDDSFIGIVTANLLGSKYHIWDQGTCLNSVAKRSKPLLAVVTFMPTIATLTGSYRNIRAWIPKHQSMQLKNSTQIQHINGLPNDWESKKDKVHQLFSRVPHYNSVSKQYELDFRERGRAGLRIQSSVKNFQLTLEEKGKQTILQLGRVGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCTV* 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 18883842 18888663 + Vvi9g941 Vvi9g941 792652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g941 377 PRINTS Tubby superfamily signature 200 224 IPR000007 -
Vvi9g941 377 PRINTS Tubby superfamily signature 313 329 IPR000007 -
Vvi9g941 377 PRINTS Tubby superfamily signature 333 352 IPR000007 -
Vvi9g941 377 PRINTS Tubby superfamily signature 354 376 IPR000007 -
Vvi9g941 377 MobiDBLite consensus disorder prediction 28 56 - -
Vvi9g941 377 SUPERFAMILY Tubby C-terminal domain-like 112 376 IPR025659 -
Vvi9g941 377 Pfam Tub family 125 371 IPR000007 -
Vvi9g941 377 Gene3D Tubby Protein; Chain A 120 370 IPR025659 -
Vvi9g941 377 PANTHER TUBBY-RELATED 5 375 - -
Vvi9g941 377 PANTHER TUBBY-LIKE PROTEIN 8 5 375 - -
Vvi9g941 377 Coils Coil 377 377 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15252 PF01167 Tub 1.50E-42 CL0395 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g941 K19600 - vvi:100248428 777.319