Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g942 ATGGCCAAGACCTCACAGAAGAGCCAGAAAACCACTGGTAATAGTACTAACAACAATGGTGGCAGTGTGGCCAAGGTCAAGAGGACTAGGAAGAGTGTCCCTAGAGACTCTCCCCCGCAGAGAAGCTCCATTTTTCGGGGCGTTACAAGGCACCGGTGGACGGGTCGGTATGAGGCTCATTTGTGGGATAAGAACTGCTGGAATGAGTCACAAAACAAAAAGGGAAGGCAAGTGTATCTAGGGGCTTATGATGATGAAGAAGCTGCAGCACATGCTTATGACTTGGCAGCATTGAAGTACTGGGGTCAAGAGACCATTCTCAATTTCCCATTATCGGCATATCAAGAGGAGCTCAAAGAAATGGAAGGACAATCCAAAGAAGAATATATCGGATCTTTGAGGAGAAAAAGTAGTGGGTTTTCTCGAGGGGTGTCAAAATACAGAGGCGTAGCCAGGCACCATCATAATGGAAGATGGGAGGCTAGAATTGGAAGAGTTTTTGGCAACAAATATCTTTACCTTGGAACCTATGCCACCCAGGAGGAGGCAGCAACTGCATATGACATGGCAGCTATAGAGTACAGAGGACTTAATGCTGTGACCAACTTTGACCTCAGCCGTTACATCAACAGCCCAGCTCCAAACCCTAACCCAAGTGATCATGAGCTTGGCTTGAGCTTCCTCCAACAGCAGCATGGCTCGGATGCGACTGAGCTGCCTCTAAGCCATGCACGATCGGACTGCCCATTGACTCCTCCAGATCAGATCGAGATGCCCAGGAGTAGCTTTCCAGATGACATTCAGACTTACTTTGATTGTCAGGAGACGAACAGCTATGGCGAGAGTGATGATATTATTTTTGGCGACTTGAAGTACTTCTCTTCCCCTATGTTCCAGTGCGAGCTTGACACATAA 915 47.76 MAKTSQKSQKTTGNSTNNNGGSVAKVKRTRKSVPRDSPPQRSSIFRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGQETILNFPLSAYQEELKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYINSPAPNPNPSDHELGLSFLQQQHGSDATELPLSHARSDCPLTPPDQIEMPRSSFPDDIQTYFDCQETNSYGESDDIIFGDLKYFSSPMFQCELDT* 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 18937899 18941360 + Vvi9g942 Vvi9g942 792653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g942 304 MobiDBLite consensus disorder prediction 1 25 - -
Vvi9g942 304 MobiDBLite consensus disorder prediction 1 47 - -
Vvi9g942 304 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 222 - -
Vvi9g942 304 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 254 289 - -
Vvi9g942 304 CDD AP2 145 206 IPR001471 GO:0003700|GO:0006355
Vvi9g942 304 Pfam AP2 domain 145 196 IPR001471 GO:0003700|GO:0006355
Vvi9g942 304 Pfam AP2 domain 45 102 IPR001471 GO:0003700|GO:0006355
Vvi9g942 304 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Vvi9g942 304 PRINTS Ethylene responsive element binding protein signature 186 206 IPR001471 GO:0003700|GO:0006355
Vvi9g942 304 ProSiteProfiles AP2/ERF domain profile. 146 204 IPR001471 GO:0003700|GO:0006355
Vvi9g942 304 SMART rav1_2 146 210 IPR001471 GO:0003700|GO:0006355
Vvi9g942 304 SMART rav1_2 44 116 IPR001471 GO:0003700|GO:0006355
Vvi9g942 304 SUPERFAMILY DNA-binding domain 145 206 IPR016177 GO:0003677
Vvi9g942 304 Gene3D AP2/ERF domain 145 206 IPR036955 GO:0003700|GO:0006355
Vvi9g942 304 Gene3D AP2/ERF domain 44 112 IPR036955 GO:0003700|GO:0006355
Vvi9g942 304 ProSiteProfiles AP2/ERF domain profile. 44 110 IPR001471 GO:0003700|GO:0006355
Vvi9g942 304 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1 222 - -
Vvi9g942 304 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 254 289 - -
Vvi9g942 304 SUPERFAMILY DNA-binding domain 43 112 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi9g942 Vvi11g997 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15253 PF00847 AP2 9.90E-13 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g942 K09285 - vvi:100260401 576.63