Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi9g942 | ATGGCCAAGACCTCACAGAAGAGCCAGAAAACCACTGGTAATAGTACTAACAACAATGGTGGCAGTGTGGCCAAGGTCAAGAGGACTAGGAAGAGTGTCCCTAGAGACTCTCCCCCGCAGAGAAGCTCCATTTTTCGGGGCGTTACAAGGCACCGGTGGACGGGTCGGTATGAGGCTCATTTGTGGGATAAGAACTGCTGGAATGAGTCACAAAACAAAAAGGGAAGGCAAGTGTATCTAGGGGCTTATGATGATGAAGAAGCTGCAGCACATGCTTATGACTTGGCAGCATTGAAGTACTGGGGTCAAGAGACCATTCTCAATTTCCCATTATCGGCATATCAAGAGGAGCTCAAAGAAATGGAAGGACAATCCAAAGAAGAATATATCGGATCTTTGAGGAGAAAAAGTAGTGGGTTTTCTCGAGGGGTGTCAAAATACAGAGGCGTAGCCAGGCACCATCATAATGGAAGATGGGAGGCTAGAATTGGAAGAGTTTTTGGCAACAAATATCTTTACCTTGGAACCTATGCCACCCAGGAGGAGGCAGCAACTGCATATGACATGGCAGCTATAGAGTACAGAGGACTTAATGCTGTGACCAACTTTGACCTCAGCCGTTACATCAACAGCCCAGCTCCAAACCCTAACCCAAGTGATCATGAGCTTGGCTTGAGCTTCCTCCAACAGCAGCATGGCTCGGATGCGACTGAGCTGCCTCTAAGCCATGCACGATCGGACTGCCCATTGACTCCTCCAGATCAGATCGAGATGCCCAGGAGTAGCTTTCCAGATGACATTCAGACTTACTTTGATTGTCAGGAGACGAACAGCTATGGCGAGAGTGATGATATTATTTTTGGCGACTTGAAGTACTTCTCTTCCCCTATGTTCCAGTGCGAGCTTGACACATAA | 915 | 47.76 | MAKTSQKSQKTTGNSTNNNGGSVAKVKRTRKSVPRDSPPQRSSIFRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGQETILNFPLSAYQEELKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYINSPAPNPNPSDHELGLSFLQQQHGSDATELPLSHARSDCPLTPPDQIEMPRSSFPDDIQTYFDCQETNSYGESDDIIFGDLKYFSSPMFQCELDT* | 305 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 18937899 | 18941360 | + | Vvi9g942 | Vvi9g942 | 792653 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi9g942 | 304 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Vvi9g942 | 304 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
Vvi9g942 | 304 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 222 | - | - | |
Vvi9g942 | 304 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 254 | 289 | - | - | |
Vvi9g942 | 304 | CDD | AP2 | 145 | 206 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi9g942 | 304 | Pfam | AP2 domain | 145 | 196 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi9g942 | 304 | Pfam | AP2 domain | 45 | 102 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi9g942 | 304 | PRINTS | Ethylene responsive element binding protein signature | 45 | 56 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi9g942 | 304 | PRINTS | Ethylene responsive element binding protein signature | 186 | 206 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi9g942 | 304 | ProSiteProfiles | AP2/ERF domain profile. | 146 | 204 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi9g942 | 304 | SMART | rav1_2 | 146 | 210 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi9g942 | 304 | SMART | rav1_2 | 44 | 116 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi9g942 | 304 | SUPERFAMILY | DNA-binding domain | 145 | 206 | IPR016177 | GO:0003677 | |
Vvi9g942 | 304 | Gene3D | AP2/ERF domain | 145 | 206 | IPR036955 | GO:0003700|GO:0006355 | |
Vvi9g942 | 304 | Gene3D | AP2/ERF domain | 44 | 112 | IPR036955 | GO:0003700|GO:0006355 | |
Vvi9g942 | 304 | ProSiteProfiles | AP2/ERF domain profile. | 44 | 110 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi9g942 | 304 | PANTHER | AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR | 1 | 222 | - | - | |
Vvi9g942 | 304 | PANTHER | AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR | 254 | 289 | - | - | |
Vvi9g942 | 304 | SUPERFAMILY | DNA-binding domain | 43 | 112 | IPR016177 | GO:0003677 |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15253 | PF00847 | AP2 | 9.90E-13 | CL0081 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi9g942 | K09285 | - | vvi:100260401 | 576.63 |