Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g955 ATGTTGTGCGCGCTCTCTCCTCCACCAGCCCTAGCTCTTTTCACAAATCAGACAGTTCTCTCTTCTTCCAAGAACCTTCTCTCTTCTTTTCTCTCTCTAGAAAGACTCTTTCCATGGATGATTTCCTCAAGACGATCATCCAACGCCAGAACCCCCTCTTCTTCCTCGAAAACAAGAAAAGGGAAAGAGACCCAACTCAGTCGTCCACTCATGAAGCCGAATCAACCCCCTACCGCCGCCGCCTCCTCCTCAGCCGCCAATACCCGGATTCGGCCTCGACGGCGGCCCGACCTCACGCTTCCTCTCCCGCAGCGGGATCCTTCCCTTGCCGTGCCGCTTCCTCTTCCGCCGACGTCGGCTCAGTCTTCAATCAACAGAATCGGAAGCGGTAGCGGCGGCACCCACATGGACGGTGGATCTCTTGAGGGGACTCACATCGCGGACGAGCTCGCTCTCTCCGATCTCGCGTTTCAGATCCTCTCCGGCCTCCACTACCTCCATCGCCGGAAAATCGTGCACCGCGACATCAAACCTTCGAACCTCCTAATCAACGCCAGGCGACAAGTGAAGATCGCCGACTTCGGTGTGAGCCGGATCTTGGCTCAGACCATGGATCCGTGTAACTCATCGGTGGGAACGATCGCGTACATGAGTCCGGAGCGGATCAACACCGATCTCAACCACGGCAGATACGACGGCTACGCTGGCGACATCTGGAGCCTCGGTGTGAGCATCTTGGAGTTTTATTTAGGGCGTTTCCCGTTTGCTGTCGGCCGGCAAGGGGATTGGGCGAGTTTGATGTGCGCAATCTGTATGTCGCAGCCGCCGGAGGCGCCAGTCACTGCATCAAGGGAGTTTAGGGACTTCATATCACGGTGTCTGCAGAGGGATCCGGCGGTCCGGTGGTCGGCAGACAAACTTCTCCGGCACCCCTTTGTGCTTCAGAGTCAGAGAAGAAGAGGACAGAGTCAAAGCCAGGTTCATCATCCTCCCCAGCTTCTTCCTCCTCCACGCCTGCATTCCTCGACCCAATTCAGATCAACCCCAAAGGTGCCAACTCTCTATGTGTGCATTTTCACCATGAACCTCGAGAATGGGTGTGTCTCTTTCATTTTGATCTACTGCCATGGACCCACTCCTGCATGGTCAGCGCACTACCTAAATGGGCCTAAGTGTCAGTCCTCTTAA 1188 55.72 MLCALSPPPALALFTNQTVLSSSKNLLSSFLSLERLFPWMISSRRSSNARTPSSSSKTRKGKETQLSRPLMKPNQPPTAAASSSAANTRIRPRRRPDLTLPLPQRDPSLAVPLPLPPTSAQSSINRIGSGSGGTHMDGGSLEGTHIADELALSDLAFQILSGLHYLHRRKIVHRDIKPSNLLINARRQVKIADFGVSRILAQTMDPCNSSVGTIAYMSPERINTDLNHGRYDGYAGDIWSLGVSILEFYLGRFPFAVGRQGDWASLMCAICMSQPPEAPVTASREFRDFISRCLQRDPAVRWSADKLLRHPFVLQSQRRRGQSQSQVHHPPQLLPPPRLHSSTQFRSTPKVPTLYVCIFTMNLENGCVSFILIYCHGPTPAWSAHYLNGPKCQSS* 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19257787 19265261 + Vvi9g955 Vvi9g955 792666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g955 395 MobiDBLite consensus disorder prediction 68 89 - -
Vvi9g955 395 SUPERFAMILY Protein kinase-like (PK-like) 136 370 IPR011009 -
Vvi9g955 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Vvi9g955 395 Pfam Protein kinase domain 147 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g955 395 Gene3D Transferase(Phosphotransferase) domain 1 124 333 - -
Vvi9g955 395 ProSiteProfiles Protein kinase domain profile. 1 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g955 395 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 90 125 - -
Vvi9g955 395 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 135 328 - -
Vvi9g955 395 MobiDBLite consensus disorder prediction 44 60 - -
Vvi9g955 395 MobiDBLite consensus disorder prediction 317 345 - -
Vvi9g955 395 MobiDBLite consensus disorder prediction 44 110 - -
Vvi9g955 395 SMART serkin_6 121 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g955 395 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 135 328 - -
Vvi9g955 395 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 90 125 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76883 PF00069 Pkinase 1.80E-41 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g955 K13413 - vvi:100258699 410.994