Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g974 ATGGCTGAGGTAGACAGCTTTCAGAATCTGCTAGCTGCAAGGATGTTTTTGAAAACAAGCCTAGAGAAATCAAGAACTGTAGCTTCTGGCCTGGAGAAAACCGGCCCCAGGTTGGAGGAGATTAAGCAAAGACTGTCATCATTGGAAGCTGCGGTTCGGCCTCTTCGGGCACAGAAATGTAGTCTTGCTGCAGTTGGGGGCCATATCAGCCGCGCAGTTGGCCCTGCTGCTGCAGTTCTGAAGGTGTTTGATGCCATCCATGGGCTGGAGAAGTCGCTTTCGTCTGACCCGACTTCAGACCTCTATGGGTACCTCTTAGTCGTTAAAAGGCTGGAGGAGGCCTTGAGGTTTCTGGCTGAGAATTGTGGATTGGCAATAAGGTGGTTGGAGGATGTGGTTGAGTTCTTGAAAGATAATGGCGTCACGGATGATCACCGGTACCTCTCCAATGTGACTAAATCTTTGAACATCCTCAGGGAGTTGCAGGCAAGCGAAGAACGTGCCCGTCTCGATGGAGGGCTTCTCAGTGCTGCATACGACAAGCTGGAAACCGAATACAGACGGCTTTTGGGAGAAAATGGTGTTCCTCTTCCCATCATTTCCTCGTCATCTTCCATTATATCTATCTTCGAGTTCGATAACTTTCTGAACATGGAGAGTTCCGTAGATCTGTGGAGCAAGCATTTAGAGTATGCTGTGAAGAATCTGCTGGAGCTCGAGTACCAGCTCTGCAACGACGTTTTTGAGAAGATCGGGTCGGATGTTTCAATGGATTGCTTTGCAAGGATTGCTATCCAGTCCGGATTTCTGGCTTTCATTCAGTTTGGGAACACTGTCACAGAGAGTAAGAAAGATGCAGTCAAGCTCTTTAAACTATTGAAAATCTTCCATACTTTGAATGAACTGAGATTGGATTTCAACCGCCTGTTCGGGGGAAAATCTTGCATTGAAATTCGAATCCCAACCAGGCATCTCATCAAGAGGGTGATCGATGGTGCTTGTGAGATATTTTGGGAGCTTTTGCCGCAGGTGGAGGCTCATAAGGGGACTTCTCCTCCTTCCAATGGCAGTGTTCCAAGTCTGGTGAGCTTCGTCGTTGACTACTGTAACCAGCTGCTCCAGGATGATTACAGGCCAACCATGATACAGGTTCTGGAGATTCACCAGAACTGGAAACACCAAAAATTTCAAGAAGAACTCTTGAGGAAGGAGGTCCGCAACATTGTGGAGGCGGTTCAGCGGAACCTGGATGCCTGGTCCAAGGCCTATGAGGACACCTCACTGTCCTACATTTTCTTGATGAACAATCACTGTCACTTGTACAAGGCCCTCAAGGGGACAAGCCTTGGGAACCTCATAGGTGACTCTCAGTTGAAAGAACACAAAAAGAACAAGGACTATTACGCGTCGATCTACTTGAGGGAGAGTTGGGGAATGCTTCCAGGCCTTTTAGGCCATGAGGATGAGACCTTGTTCTCAGGTGGAAGGGCCATGGCCTGCAGTCTGGTGAAGAAGAAGCTGAAGGCATTCAATGAGGCCTTGGATGGAACCTATAAGAAGCAATCGAACTGGGACGTGGCCGACGAAAACCTCAGGAAGAGGATATGCCAGCTTGTGGTTGATGCCATTGTGCCTGTATATAGGAGCTACATTCAGAAATATGGGCATTTTATTGAACAAGATGGCATTAAGAATGTGAAAATTTACTCTGAAGAGGGTTTGGTGAGTATGCTGAGCTCAATGTTTCAGCCAAAGAAGGGGAAGTGTTATAGCATTAATACCAGGCACTCCATTGATAAAATGAGTGAGATTGTCACCAGTCGGTTTCCCTCTACTACTGTTGTAGCATGA 1851 47.38 MAEVDSFQNLLAARMFLKTSLEKSRTVASGLEKTGPRLEEIKQRLSSLEAAVRPLRAQKCSLAAVGGHISRAVGPAAAVLKVFDAIHGLEKSLSSDPTSDLYGYLLVVKRLEEALRFLAENCGLAIRWLEDVVEFLKDNGVTDDHRYLSNVTKSLNILRELQASEERARLDGGLLSAAYDKLETEYRRLLGENGVPLPIISSSSSIISIFEFDNFLNMESSVDLWSKHLEYAVKNLLELEYQLCNDVFEKIGSDVSMDCFARIAIQSGFLAFIQFGNTVTESKKDAVKLFKLLKIFHTLNELRLDFNRLFGGKSCIEIRIPTRHLIKRVIDGACEIFWELLPQVEAHKGTSPPSNGSVPSLVSFVVDYCNQLLQDDYRPTMIQVLEIHQNWKHQKFQEELLRKEVRNIVEAVQRNLDAWSKAYEDTSLSYIFLMNNHCHLYKALKGTSLGNLIGDSQLKEHKKNKDYYASIYLRESWGMLPGLLGHEDETLFSGGRAMACSLVKKKLKAFNEALDGTYKKQSNWDVADENLRKRICQLVVDAIVPVYRSYIQKYGHFIEQDGIKNVKIYSEEGLVSMLSSMFQPKKGKCYSINTRHSIDKMSEIVTSRFPSTTVVA* 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19633643 19635659 + Vvi9g974 Vvi9g974 792685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g974 616 Pfam Exo70 exocyst complex subunit 225 579 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vvi9g974 616 SUPERFAMILY Cullin repeat-like 79 582 IPR016159 -
Vvi9g974 616 PANTHER EXOCYST COMPLEX PROTEIN EXO70 9 204 IPR004140 GO:0000145|GO:0006887
Vvi9g974 616 PANTHER EXOCYST COMPLEX PROTEIN EXO70 214 587 IPR004140 GO:0000145|GO:0006887
Vvi9g974 616 Coils Coil 38 58 - -
Vvi9g974 616 Gene3D Exocyst complex component Exo70 77 589 - -
Vvi9g974 616 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 214 587 - -
Vvi9g974 616 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 9 204 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g974 K07195 EXOC7, EXO70; exocyst complex component 7 - vvi:100262054 1090.49
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g196 Vvi9g974 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g974 . . . . . . . . . . . . . . . Cpe12g00541 . . . . . . . . . . . . . . . . . . . . Csa07g02292 . Cme01g02744 . . . . . . . . . . . . . . Car17g00602 . . . . . . . . . Cla09g00140 Cam09g0150 Cec09g0155 Cco09g0153 Clacu09g0156 . Cre09g0142 . . Chy01g02114 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi13g774 . 1 645 EXO70 exocyst subunit family AT5G03540 79.3 1.2e-295 1012.3
Vvi8g903 . 1 649 EXO70 exocyst subunit family AT5G03540 73.1 7.1e-275 943.3
Vvi8g903 . 1 649 EXO70 exocyst subunit family AT5G52340 76.7 1.4e-288 988.8
Vvi13g774 . 1 645 EXO70 exocyst subunit family AT5G52340 75.2 5.9e-279 956.8
Vvi8g903 . 145 644 EXO70 exocyst subunit family AT5G52350 60.6 2.9e-171 599.0
Vvi13g774 . 139 644 EXO70 exocyst subunit family AT5G52350 59.1 1.2e-164 577.0
Vvi6g709 . 74 616 EXO70 exocyst subunit family AT5G58430 70.1 2.0e-234 808.9
Vvi6g709 . 68 616 EXO70 exocyst subunit family AT1G07000 55.4 5.0e-171 598.2
Vvi9g67 . 9 583 EXO70 exocyst subunit family AT1G72470 66.7 3.7e-225 778.1
Vvi9g67 . 9 579 EXO70 exocyst subunit family AT1G54090 63.8 8.8e-219 756.9
Vvi9g67 . 1 580 EXO70 exocyst subunit family AT3G14090 63.6 4.1e-224 774.6
Vvi17g116 . 1 460 EXO70 exocyst subunit family AT5G50380 50.2 5.8e-155 545.0
Vvi4g196 ECH 6 626 EXO70 exocyst subunit family AT4G31540 72.6 1.5e-275 945.7
Vvi9g976 ECH 8 637 EXO70 exocyst subunit family AT4G31540 57.9 1.1e-211 733.4
Vvi9g974 ECH 8 615 EXO70 exocyst subunit family AT4G31540 51.8 2.0e-187 652.9
Vvi8g639 . 112 675 EXO70 exocyst subunit family AT3G09520 56.6 3.0e-182 635.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0031795 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2