Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g982 ATGCCTCCTTCGGTACCATGCCTCCATTTTTTTTTCAGCCATTGGATGAAAATGATTAAATCTCAGCCATCCAACCCAATATGGATTCGGTACCGTAGCATAACCCTTGTAATATTTTTGGTTTTAATTTTATTTTTCATTTTCTGCGATGAATCTGATTCCAGTAAAGAACCGCGAGGTGGCTCCGTTGAAGACCGGCGGCGCCATCTCTCGTGCGGCAGGCCAATCATGAACGGAAGTGGTGACATGGAGGCTGCATCTGCCTCTGGCGGTGGCATGGTCGGCGGCGATGAGGATGAGGTGGTGTATTTGGATCCCTTCAATATTGCTACCACCAAGAACGCTTCTGTGGAGACGCTGAAGCGATGGAGGCAAGCAGCACTCGTGCTCAATGCTTCTCGTCGATTTCGGTACACATTGGACTTAAGAAAGGAAGAAGAGAAAGAGCAAAGAAGAAGGATGATTAGAGCACATGCACAAGTCATAAGAGCGGCATTGCTTTTCAAATTGGCTGGGGAACAAGCAACAATAGTGTTGGGTACTACAGTATCACCACCAAGTCCAGTTGGTGATTATTTAATTGGAGTGGAACAGCTTGCTTCAATGACCAGAGATCATAATTTTTCTGCTCTGCAAGAATATGGAGGGGCAAGATTATCGGATTTATTAGAAACAAATCTAGAGAAAGGAACTGATGGGGATGATGCTAGTCTATCAAAAAGAAGAAACATGTTTGGATCAAATACATATCCTCAGAAAAAAGGGCGGAGTTTCTTGATGTTCCTTTGGGAAGCTTGGCAAGATTTAACCCTTATCATCTTGATTGTAGCTGCAGCAGCATCATTGGCTTTAGGAATAAAAACTGAGGGTGTGAAAGAAGGATGGTATGATGGGGGTAGCATTGCCTTTGCAGTGTTTCTTGTTATATTTGTTACTGCAATTAGTGATTACCGACAGTCCCTGCAATTTCAAAATTTAAATGAGGAAAAACGAAATATACATTTAAAGGTCATTAGAGGTGGCAGACCCGTGGAGATATCAATATTTGATATTGTTGTTGGTGATGTTGTACCTTTAAGCATAGGTGACCAGGTCCCTGCAGATGGAATCTTAATTACTGGTCATTCTCTTGCAATTGATGAATCTAGCATGACTGGTGAAAGCAAGATTGTTCACAAGGATCATAAGGCACCCTTTTTGATGTCTGGTTGCAAAGTGGCAGATGGTGTTGGTACTATGCTGGTAACTGGTGTGGGAATCAATACTGAATGGGGATTGTTGATGGCAAGTATCTCAGAGGATACTGGTGAAGAAACCCCCTTGCAGGTACGCTTGAATGGGGTTGCAACTTTTATAGGCATAGTTGGGCTTGCAGTTGCTGTTTCTGTACTGGCTGTCCTTTTGATAAGATACTTTACTGGACATACGAGAGATTCAGATGGAACAGTCCAATTTAAAAGTGGTGTTACGAGTTTTGGTGATGCTGTAGATGATGTCATTAAAATCATTACAATTGCAGTCACCATTGTGGTTGTTGCAGTGCCTGAAGGGCTGCCTTTGGCTGTTACCTTGACCCTAGCATACTCCATGCGAAAGATGATGGCAGATAAGGCTTTGGCATGTGTGCGTAGGCTTTCAGCCTGTGAAACTATGGGCTCTGCAACAACAATTTGCAGTGATAAGACTGGAACATTAACCTTGAATAAGATGACTGTGGTTGAGGCTTATGTAGGGAGAAAGAAGATAGATCCACCAGATGACTCCTCACAGTTGCATCCAGATGTTTCATCTCTGCTACATGAGGGCATTGCCTGCAATACCCAGGGCAATGTTTTTGTGCCTAAGGGTGGTGGAGAAGAAAAAATGGAAATTTCTGGATCTCCTACAGAAAAGGCTATCCTTGCTTGGGCAGTCAAGTTGGGGATGAAGTTTGATGTAATAAGAGAAGAATCCTCAATTCTCCATGTTTTCCCTTTCAACTCAGAGAAAAAGAGAGGTGGTGTTGCAGTACAGGGTGACAATAAAGTTCATATACATTGGAAGGGAGCAGCTGAGATGGTACTAGGCTCCTGTACGGAATATCTTGACTCAAATGGTTGTTTGCAGCCCATGGGTGAAGATAAGGAGTTCTTCAGTGAAGCTATTAATCAAATGGCTGCAAGCAGCTTGCGCTGTGTTGCAATTGCATACAGAACATTTGACTTGGACAAAATGCCAATTGATGAGGAGCAACGAGACCAATGGGTTTTGCCTGAAAATGACCTTGTTTTGCTTTCTATTGTTGGTATAAAGGATCCTTGTCGTTCAGGTGTCCAAAATGCTGTGAGAATTTGCACGAATGCTGGTGTTAAGGTACGCATGATCACTGGAGATAATCTTCAAACAGCCAAGGCAATAGCTTTAGAGTGTGGGATACTTCCTTCTGAAGCAGATGCTACTGAACCTAATATCATAGAAGGAAGAGCATTCCGTGTATTATCTGAGAGAGAAAGAGAACAAGTTGCCAAGAAAATATTGGTGATGGGAAGATCTTCTCCTAATGATAAACTTCTCCTTGTGCAAGCGCTACGCAAGGCTGGTGAGGTTGTTGCCGTAACAGGAGATGGCACTAATGATGCTCCTGCACTTCATGAGGCAGATATAGGTCTCTCTATGGGCATTCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGACATCATTATCTTGGATGATAACTTTGCCTCAGTTGTAAAGGTTGTTCGCTGGGGGCGTTCTGTCTATGCAAATATTCAAAAATTTATCCAGTTCCAGCTCACTGTTAATGTTGCAGCTCTTATTATAAATGTTGTTGCATCAGTTTCCTCTGGTGATGTTCCTTTAAATGCAGTGCAGCTTCTATGGGTTAACCTTATCATGGATACTCTTGGAGCACTTGCATTGGCTACTGAACCACCAACTGATCATCTTATGGAAAGATCTCCAGTTGGTCGAAGAGAACCTCTTATTACAAATATCATGTGGAGGAACCTAATCATTCAGGCTCTTTATCAAGTCAGTGTCCTCCTTGTCCTCAACTTCTGCGGTATAAGTATTCTTCATTTGAAGGATGAAACCAGGAAGCATGCAACTCAAGTGAAGAATAGTATGATATTCAACTCATTTGTCCTATGCCAAATATTCAACGAGTTCAATGCCAGAAAGCCAGATGAAATTAATGTCTTTACTGGAGTGACTAAAAATTACCTATTTATGGGGATCATTGGAATCACCTTTGCGCTTCAGATTATCATCATTGAGTTTCTTGGAAAGTTTACATCAACAGTTAAACTCAGTTGGAAATTATGGATGGTTTCTTTGGCAATTGGCCTTGTCAGCTGGCCTCTGGCCATCATTGGGAAACTCATTCCAGTTCCTGAGACTCCCTTTGCCAAGTTCTTCACTAAGCCATTTCAGCAAAGGAGAGCGGGTCATTGGGCTTAG 3459 42.41 MPPSVPCLHFFFSHWMKMIKSQPSNPIWIRYRSITLVIFLVLILFFIFCDESDSSKEPRGGSVEDRRRHLSCGRPIMNGSGDMEAASASGGGMVGGDEDEVVYLDPFNIATTKNASVETLKRWRQAALVLNASRRFRYTLDLRKEEEKEQRRRMIRAHAQVIRAALLFKLAGEQATIVLGTTVSPPSPVGDYLIGVEQLASMTRDHNFSALQEYGGARLSDLLETNLEKGTDGDDASLSKRRNMFGSNTYPQKKGRSFLMFLWEAWQDLTLIILIVAAAASLALGIKTEGVKEGWYDGGSIAFAVFLVIFVTAISDYRQSLQFQNLNEEKRNIHLKVIRGGRPVEISIFDIVVGDVVPLSIGDQVPADGILITGHSLAIDESSMTGESKIVHKDHKAPFLMSGCKVADGVGTMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLAVAVSVLAVLLIRYFTGHTRDSDGTVQFKSGVTSFGDAVDDVIKIITIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALACVRRLSACETMGSATTICSDKTGTLTLNKMTVVEAYVGRKKIDPPDDSSQLHPDVSSLLHEGIACNTQGNVFVPKGGGEEKMEISGSPTEKAILAWAVKLGMKFDVIREESSILHVFPFNSEKKRGGVAVQGDNKVHIHWKGAAEMVLGSCTEYLDSNGCLQPMGEDKEFFSEAINQMAASSLRCVAIAYRTFDLDKMPIDEEQRDQWVLPENDLVLLSIVGIKDPCRSGVQNAVRICTNAGVKVRMITGDNLQTAKAIALECGILPSEADATEPNIIEGRAFRVLSEREREQVAKKILVMGRSSPNDKLLLVQALRKAGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALIINVVASVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMERSPVGRREPLITNIMWRNLIIQALYQVSVLLVLNFCGISILHLKDETRKHATQVKNSMIFNSFVLCQIFNEFNARKPDEINVFTGVTKNYLFMGIIGITFALQIIIIEFLGKFTSTVKLSWKLWMVSLAIGLVSWPLAIIGKLIPVPETPFAKFFTKPFQQRRAGHWA* 1153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20056191 20128267 - Vvi9g982 Vvi9g982 792693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g982 1152 PANTHER CATION TRANSPORTING ATPASE 96 1144 - -
Vvi9g982 1152 CDD P-type_ATPase_Ca_PMCA-like 238 999 - -
Vvi9g982 1152 Gene3D - 568 766 IPR023299 GO:0000166
Vvi9g982 1152 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 565 763 IPR023299 GO:0000166
Vvi9g982 1152 SUPERFAMILY Calcium ATPase, transmembrane domain M 218 1130 IPR023298 -
Vvi9g982 1152 SFLD p-type atpase 541 918 IPR044492 -
Vvi9g982 1152 Pfam haloacid dehalogenase-like hydrolase 555 880 - -
Vvi9g982 1152 SFLD Haloacid Dehalogenase 541 918 - -
Vvi9g982 1152 PANTHER CALCIUM-TRANSPORTING ATPASE 96 1144 - -
Vvi9g982 1152 SUPERFAMILY HAD-like 556 971 IPR036412 -
Vvi9g982 1152 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 209 1130 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vvi9g982 1152 Pfam Ca2+-ATPase N terminal autoinhibitory domain 105 147 IPR024750 GO:0005516
Vvi9g982 1152 PRINTS P-type cation-transporting ATPase superfamily signature 380 394 - -
Vvi9g982 1152 PRINTS P-type cation-transporting ATPase superfamily signature 558 572 - -
Vvi9g982 1152 PRINTS P-type cation-transporting ATPase superfamily signature 759 770 - -
Vvi9g982 1152 PRINTS P-type cation-transporting ATPase superfamily signature 781 791 - -
Vvi9g982 1152 PRINTS P-type cation-transporting ATPase superfamily signature 866 885 - -
Vvi9g982 1152 PRINTS P-type cation-transporting ATPase superfamily signature 890 902 - -
Vvi9g982 1152 Gene3D - 115 170 - -
Vvi9g982 1152 SUPERFAMILY Calcium ATPase, transduction domain A 334 429 IPR008250 -
Vvi9g982 1152 SMART Cation_ATPase_N_a_2 207 286 IPR004014 -
Vvi9g982 1152 Gene3D - 555 911 IPR023214 -
Vvi9g982 1152 Pfam Cation transporter/ATPase, N-terminus 219 281 IPR004014 -
Vvi9g982 1152 Gene3D - 237 432 - -
Vvi9g982 1152 Gene3D - 264 1119 - -
Vvi9g982 1152 Pfam Cation transporting ATPase, C-terminus 951 1128 IPR006068 -
Vvi9g982 1152 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 490 587 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi9g982 1152 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 833 946 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi9g982 1152 ProSitePatterns E1-E2 ATPases phosphorylation site. 560 566 IPR018303 -
Vvi9g982 1152 Pfam E1-E2 ATPase 334 534 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g982 K01537 - vvi:100253521 1977.6