Orthologous Gene Search

  Genes that are duplicated as concomitant events of species formation and continue to have the same function are called orthologous genes. New gene functions can be caused by duplications that occur within the genome of a single species. Duplications within a genome result in paralogous gene.

  Orthogroups, orthologs and paralogs genes were identified using OrthoFinder (v2.5.1). First, the similarity relationship between protein sequences of all species was based on the Blastp similarity score (E-value 51e-5). The sequence alignment program was blast_gz and the conformational tree method was FastTree. MCL graph clustering algorithm (Inflation value >1.5) was used for cluster analysis to obtain single-copy and multi-copy gene families.

Orthogroup analysis platform

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Select Orthogroup Total Tree Image Download Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa Hepe Lac Lcy Lsi Mch Sed Tan Vvi
OG0001480 73 3 2 5 2 4 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 2 3
OG0001481 73 1 6 0 1 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 6 2
OG0001482 73 3 2 3 2 3 1 4 1 1 2 2 1 4 2 2 3 1 7 5 1 2 1 2 3 2 2 2 4 3
OG0001483 73 1 8 3 2 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 4
OG0001484 73 3 4 2 1 1 2 3 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3
OG0001485 73 1 3 2 1 2 2 4 2 2 1 2 2 4 3 3 4 3 2 4 2 3 2 3 3 3 3 2 2 2
OG0001486 73 0 7 2 3 1 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 4 2
OG0001487 73 0 7 1 2 1 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 4 6
OG0001488 73 0 2 2 7 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2
OG0001489 73 0 2 1 0 0 3 3 2 3 2 2 3 2 3 3 2 3 3 2 3 2 2 2 3 2 3 3 6 7
   
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