Orthologous Gene Search

  Genes that are duplicated as concomitant events of species formation and continue to have the same function are called orthologous genes. New gene functions can be caused by duplications that occur within the genome of a single species. Duplications within a genome result in paralogous gene.

  Orthogroups, orthologs and paralogs genes were identified using OrthoFinder (v2.5.1). First, the similarity relationship between protein sequences of all species was based on the Blastp similarity score (E-value 51e-5). The sequence alignment program was blast_gz and the conformational tree method was FastTree. MCL graph clustering algorithm (Inflation value >1.5) was used for cluster analysis to obtain single-copy and multi-copy gene families.

Orthogroup analysis platform

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Select Orthogroup Total Tree Image Download Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa Hepe Lac Lcy Lsi Mch Sed Tan Vvi
OG0000140 214 10 11 2 13 12 4 10 6 4 4 10 5 11 7 9 10 3 9 6 3 9 7 4 2 2 1 14 16 9
OG0000141 213 6 14 5 5 6 6 11 5 5 6 6 6 12 6 6 9 6 7 12 5 7 7 6 5 7 5 5 13 9
OG0000142 213 3 13 4 2 2 7 4 7 7 6 6 6 11 8 8 11 6 2 9 6 8 5 5 6 8 8 6 15 13
OG0000143 212 10 6 8 7 9 6 11 6 6 6 6 5 10 6 6 12 5 7 12 6 6 7 5 6 6 7 4 12 6
OG0000144 211 7 5 8 3 3 6 2 4 6 9 4 4 7 6 8 9 4 15 6 5 12 6 5 10 16 7 3 6 6
OG0000145 211 0 8 0 0 0 8 8 8 8 7 7 8 11 7 6 12 8 4 7 8 7 10 6 10 10 10 8 12 13
OG0000146 209 8 12 8 7 7 6 1 6 6 6 6 6 9 5 6 9 6 9 8 6 5 7 5 8 8 7 5 11 10
OG0000147 209 0 3 0 0 0 0 1 4 2 1 7 1 3 3 1 0 2 0 0 2 4 0 25 91 48 0 2 6 3
OG0000148 209 0 2 0 0 0 18 0 3 8 1 11 22 0 0 4 0 5 0 0 3 1 5 37 42 7 0 2 5 33
OG0000149 207 11 6 6 9 8 7 5 7 7 5 6 7 5 7 7 6 7 8 5 7 7 7 5 7 6 7 8 8 9
   
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