Orthologous Gene Search

  Genes that are duplicated as concomitant events of species formation and continue to have the same function are called orthologous genes. New gene functions can be caused by duplications that occur within the genome of a single species. Duplications within a genome result in paralogous gene.

  Orthogroups, orthologs and paralogs genes were identified using OrthoFinder (v2.5.1). First, the similarity relationship between protein sequences of all species was based on the Blastp similarity score (E-value 51e-5). The sequence alignment program was blast_gz and the conformational tree method was FastTree. MCL graph clustering algorithm (Inflation value >1.5) was used for cluster analysis to obtain single-copy and multi-copy gene families.

Orthogroup analysis platform
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Select Orthogroup Total Tree Image Download Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa Hepe Lac Lcy Lsi Mch Sed Tan Vvi
OG0000260 154 7 6 9 5 5 5 0 5 5 6 3 4 6 4 5 6 5 10 5 5 5 4 5 4 4 5 3 7 7
OG0000261 154 5 7 3 6 5 5 6 5 5 5 4 4 4 6 5 6 4 8 5 5 5 5 5 5 5 4 4 8 5
OG0000262 153 3 9 4 3 4 4 7 4 4 4 4 4 7 4 4 7 4 8 7 4 4 4 4 4 4 4 4 12 12
OG0000263 153 8 6 3 5 1 4 1 4 3 4 3 4 6 7 4 8 4 4 5 4 7 6 9 9 5 3 7 9 8
OG0000264 153 0 3 1 2 0 10 0 10 7 5 9 10 2 6 9 5 10 0 0 10 4 5 3 5 8 9 9 1 4
OG0000265 153 0 10 0 0 0 5 3 5 5 6 4 5 8 6 6 7 4 8 8 5 5 5 5 3 4 5 5 11 12
OG0000266 152 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9
OG0000267 151 6 8 5 7 6 4 7 4 4 5 4 4 5 5 5 6 4 9 4 3 5 4 4 3 2 2 4 9 8
OG0000268 151 1 5 1 1 1 6 6 6 6 4 6 6 4 6 6 4 6 2 6 6 5 5 5 7 10 5 5 9 8
OG0000269 151 0 0 0 0 0 0 0 1 1 1 1 0 0 5 131 0 0 0 0 0 0 0 0 3 3 0 0 0 5
   
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