Orthologous Gene Search

  Genes that are duplicated as concomitant events of species formation and continue to have the same function are called orthologous genes. New gene functions can be caused by duplications that occur within the genome of a single species. Duplications within a genome result in paralogous gene.

  Orthogroups, orthologs and paralogs genes were identified using OrthoFinder (v2.5.1). First, the similarity relationship between protein sequences of all species was based on the Blastp similarity score (E-value 51e-5). The sequence alignment program was blast_gz and the conformational tree method was FastTree. MCL graph clustering algorithm (Inflation value >1.5) was used for cluster analysis to obtain single-copy and multi-copy gene families.

Orthogroup analysis platform
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Select Orthogroup Total Tree Image Download Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa Hepe Lac Lcy Lsi Mch Sed Tan Vvi
OG0000310 141 4 5 2 4 0 5 3 5 6 7 5 5 2 6 7 1 5 6 1 6 5 4 3 11 9 11 4 3 4
OG0000311 141 5 6 3 5 5 4 7 4 4 4 4 4 7 4 4 7 4 6 1 4 4 4 4 5 4 4 4 10 6
OG0000312 141 0 10 1 1 1 7 1 10 9 5 9 9 0 4 3 1 9 0 1 8 4 2 3 5 4 12 6 8 6
OG0000313 141 0 0 141 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
OG0000314 141 0 0 0 0 0 0 0 7 0 1 3 0 0 1 34 0 2 0 0 3 4 5 31 8 7 24 2 0 9
OG0000315 140 1 12 0 1 0 8 0 7 7 3 4 6 4 5 8 8 6 2 2 8 4 3 2 4 5 10 6 5 7
OG0000316 140 4 5 5 5 5 4 7 4 4 4 3 4 7 4 4 6 4 7 7 4 4 4 4 4 4 4 4 7 4
OG0000317 140 5 4 5 2 3 4 8 4 4 4 4 4 7 4 4 7 4 9 7 4 4 5 4 5 3 3 4 7 6
OG0000318 140 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 5 111 6 0 3 0 11
OG0000319 140 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 126 0 0 14 0 0 0 0 0 0 0 0 0
   
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