Orthologous Gene Search

  Genes that are duplicated as concomitant events of species formation and continue to have the same function are called orthologous genes. New gene functions can be caused by duplications that occur within the genome of a single species. Duplications within a genome result in paralogous gene.

  Orthogroups, orthologs and paralogs genes were identified using OrthoFinder (v2.5.1). First, the similarity relationship between protein sequences of all species was based on the Blastp similarity score (E-value 51e-5). The sequence alignment program was blast_gz and the conformational tree method was FastTree. MCL graph clustering algorithm (Inflation value >1.5) was used for cluster analysis to obtain single-copy and multi-copy gene families.

Orthogroup analysis platform

Valid last name is required.
    
Valid last name is required.
Select Orthogroup Total Tree Image Download Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa Hepe Lac Lcy Lsi Mch Sed Tan Vvi
OG0000530 111 0 4 2 2 1 3 3 3 2 4 3 3 4 1 4 5 3 2 2 3 4 2 10 9 7 3 5 6 11
OG0000531 111 0 2 1 2 1 4 1 7 5 4 3 5 2 3 7 3 5 0 1 5 5 2 3 6 7 7 5 5 5
OG0000532 111 0 1 0 0 0 3 0 4 0 0 2 3 0 0 5 0 0 0 0 3 1 0 5 22 61 0 1 0 0
OG0000533 111 0 16 0 0 0 3 4 3 2 4 5 3 1 1 10 3 3 0 1 3 7 0 2 11 9 8 2 5 5
OG0000534 111 0 0 0 0 0 8 0 2 9 0 1 10 0 1 3 0 8 0 0 0 2 0 9 16 13 1 2 2 24
OG0000535 110 3 7 5 4 4 3 4 3 2 5 3 3 5 3 3 4 3 7 3 3 2 3 3 3 3 3 3 6 4
OG0000536 110 5 4 3 6 4 3 4 3 3 3 3 3 5 2 3 6 3 6 6 3 3 3 3 3 3 3 3 6 3
OG0000537 110 4 3 4 3 5 3 5 3 3 3 3 3 3 3 4 4 3 5 5 3 5 3 3 3 3 3 3 6 6
OG0000538 110 4 7 4 5 4 2 5 3 2 2 2 2 4 3 2 4 2 4 5 2 2 3 3 3 3 3 3 10 9
OG0000539 110 1 4 1 2 3 4 4 4 4 4 3 4 4 4 3 4 4 4 4 4 4 3 4 4 5 4 4 4 6
   
First Previous Page 54 of 3195 Next Last