Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g151 Blo01g00906 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00925 . . . . . . . . . .
Vvi1g152 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00924 . . . . . . . . . .
Vvi1g153 . . . . . . . . . Cmo18g00529 . Cma18g00549 . . . Cpe09g00689 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00923 Cam01g0951 Cec01g0954 Cco01g0992 Clacu01g0952 Cmu01g0910 Cre01g0842 . . . .
Vvi1g154 Blo01g00907 . . . . . . . . Cmo18g00533 . Cma18g00552 . Car18g00991 . Cpe09g00687 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00922 Cam01g0950 Cec01g0953 Cco01g0991 Clacu01g0951 Cmu01g0908 Cre01g0841 . . . .
Vvi1g155 . . . . . . . . . Cmo18g00531 . Cma18g00555 . . . Cpe09g00684 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00916 Cam01g0946 Cec01g0939 Cco01g0983 Clacu01g0946 Cmu01g0901 Cre01g0838 . . . .
Vvi1g156 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g157 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g158 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0490 . . . . Cme10g00319 . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00913 . . . . . . . . . .
Vvi1g159 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g00897 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g160 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 16 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
7 10516168 10518001 + Bda033875 Bda07g00897 897
1 19138901 19144881 + BLOR00906 Blo01g00906 906
1 19182425 19199849 + BLOR00907 Blo01g00907 907
1 11791579 11794367 - CaPI482276_01g009460.1 Cam01g0946 946
1 12142351 12143589 + CaPI482276_01g009500.1 Cam01g0950 950
1 12187221 12188632 + CaPI482276_01g009510.1 Cam01g0951 951
18 10395919 10400220 + Carg21538-RA Car18g00991 991
1 11685047 11687836 - CcPI632755_01g009830.1 Cco01g0983 983
1 12153315 12154555 + CcPI632755_01g009910.1 Cco01g0991 991
1 12188218 12189631 + CcPI632755_01g009920.1 Cco01g0992 992
1 11876853 11879616 - CePI673135_01g009390.1 Cec01g0939 939
1 12337293 12338527 + CePI673135_01g009530.1 Cec01g0953 953
1 12359722 12361071 + CePI673135_01g009540.1 Cec01g0954 954
1 11476385 11481682 - ClG42_01g0094600.10 Clacu01g0946 946
1 11870280 11871520 + ClG42_01g0095100.10 Clacu01g0951 951
1 11917816 11919254 + ClG42_01g0095200.10 Clacu01g0952 952
1 12206269 12211812 - ClCG01G009230.1 Cla01g00913 913
1 12360817 12362057 - ClCG01G009260.1 Cla01g00916 916
1 12760513 12763426 + ClCG01G009280.1 Cla01g00922 922
1 12771876 12773372 - ClCG01G009290.2 Cla01g00923 923
1 12801990 12805877 - ClCG01G009300.2 Cla01g00924 924
1 12809291 12823240 - ClCG01G009310.1 Cla01g00925 925
18 3573853 3575852 + CmaCh18G005490.1 Cma18g00549 549
18 3616451 3618808 + CmaCh18G005520.1 Cma18g00552 552
18 3641298 3642066 + CmaCh18G005550.1 Cma18g00555 555
10 2096713 2100445 + MELO3C012186.2.1 Cme10g00319 319
18 3902413 3904325 + CmoCh18G005290.1 Cmo18g00529 529
18 3940098 3951077 + CmoCh18G005310.1 Cmo18g00531 531
18 3978826 3979523 + CmoCh18G005330.1 Cmo18g00533 533
1 11492502 11497778 - CmPI595203_01g009010.1 Cmu01g0901 901
1 11756608 11757744 + CmPI595203_01g009080.1 Cmu01g0908 908
1 11871412 11872655 + CmPI595203_01g009100.1 Cmu01g0910 910
6 2438873 2445621 - Conep06aG0050000.1 Cone6ag0490 490
9 5984089 5985491 + Cp4.1LG09g06820.1 Cpe09g00684 684
9 6021190 6023200 - Cp4.1LG09g06870.1 Cpe09g00687 687
9 6041769 6070859 - Cp4.1LG09g06890.1 Cpe09g00689 689
1 10017965 10020708 - CrPI670011_01g008380.1 Cre01g0838 838
1 10424668 10425907 + CrPI670011_01g008410.1 Cre01g0841 841
1 10435985 10437405 + CrPI670011_01g008420.1 Cre01g0842 842
1 1529722 1536715 + Vvi1g151 Vvi1g151 151
1 1537353 1545134 + Vvi1g152 Vvi1g152 152
1 1547238 1548537 + Vvi1g153 Vvi1g153 153
1 1551755 1553292 + Vvi1g154 Vvi1g154 154
1 1558081 1561472 + Vvi1g155 Vvi1g155 155
1 1562718 1563250 - Vvi1g156 Vvi1g156 156
1 1563529 1564825 + Vvi1g157 Vvi1g157 157
1 1569134 1570145 + Vvi1g158 Vvi1g158 158
1 1572792 1582311 - Vvi1g159 Vvi1g159 159
1 1582802 1583649 + Vvi1g160 Vvi1g160 160
       

DecoBrowse