Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda01g00611 | ATGGGAATCTGCATCTCCGCTGCATCTTCTCAGATTCACGAAACTGAAGATCATTCTCAGAAAACCGCCGGCGTCTTTGAGGAAAACTATGAACTGGGTTCTGTTTGTTCTAAACAGGGAAGCAAAGGGATCAATCAAGATGCTGCTGTTCTACATCAGGTTTCAGATTATGCAGAGGAAGATGGAGCTTTTGGCGGAGTTTTTGATGGGCATGGAAGGAACGGTCATTTCGTGAGCACAATAGTGAAAAATCGCTTGCCTCGCCTCTTACTAACTCAAAAGATTGCTCAATCGGAGCTCGGTGTGAGCAAAACAATGGCGGACTGTGATGCTGAAAATGACAGAGACTATGAAACGAGAGAACCAGAGTTTTTAACCAAAAACTACAAAGAATGGGAGGAGGCCATTATCAGCGCCTTCAAAGTGATGGATAAGGAGATCAAACTTCATGAAAATCTAGACTGCTCAACCAGCGGTACCACGGCAGTAGTTGCAGTAAAACAGGGAGAAGAACTAGTGATGGCAAATCTGGGTGACTCAAGAGCAGTTTTAGGAAGCCTTACAGAGGATGGAAAGATCAGAGGCGTCCAGTTGACCACTGATCTAAAACCTGGATTACCAGAGGAGGAAGAGAGGATAAAGAAGTGCAACGGGCGGGTGATGGCGCTGAAAGAAGAGGCGCACATCCAGCGAGTGTGGCTGCCGAACGAAGACGCGCCAGGCTTGGCCATGTCAAGAGCCTTCGGTGACTTCAGTCTGAAAGTGTGGGATGTGCTGAGCAACAACGAAGTAGCGGCCATAGCTTGGGAGGCGAGGAGCGAAGAGTCGGCGGCAAAAGCGGTGGTGGAGGCGGCGGAAGTCTCGTGGAAAAGCAAGTTTCCAAACTCAAAAGTGGATGACTGTTCTGTGGTTTGCCTTTTTTTCCAAAAGATGTTGCGAGTGGGAATTTGA | 951 | 48.05 | MGICISAASSQIHETEDHSQKTAGVFEENYELGSVCSKQGSKGINQDAAVLHQVSDYAEEDGAFGGVFDGHGRNGHFVSTIVKNRLPRLLLTQKIAQSELGVSKTMADCDAENDRDYETREPEFLTKNYKEWEEAIISAFKVMDKEIKLHENLDCSTSGTTAVVAVKQGEELVMANLGDSRAVLGSLTEDGKIRGVQLTTDLKPGLPEEEERIKKCNGRVMALKEEAHIQRVWLPNEDAPGLAMSRAFGDFSLKVWDVLSNNEVAAIAWEARSEESAAKAVVEAAEVSWKSKFPNSKVDDCSVVCLFFQKMLRVGI | 316 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 33108477 | 33110052 | - | Bda002635.1 | Bda01g00611 | 611 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda01g00611 | 316 | Coils | Coil | 206 | 226 | - | - | |
| Bda01g00611 | 316 | SUPERFAMILY | PP2C-like | 34 | 309 | IPR036457 | - | |
| Bda01g00611 | 316 | SMART | PP2C_4 | 25 | 306 | IPR001932 | - | |
| Bda01g00611 | 316 | CDD | PP2Cc | 33 | 276 | IPR001932 | - | |
| Bda01g00611 | 316 | ProSiteProfiles | PPM-type phosphatase domain profile. | 32 | 308 | IPR001932 | - | |
| Bda01g00611 | 316 | Gene3D | - | 19 | 311 | IPR036457 | - | |
| Bda01g00611 | 316 | PANTHER | ALPHABET, ISOFORM E-RELATED | 255 | 310 | - | - | |
| Bda01g00611 | 316 | PANTHER | ALPHABET, ISOFORM E-RELATED | 1 | 254 | - | - | |
| Bda01g00611 | 316 | Pfam | Protein phosphatase 2C | 37 | 254 | IPR001932 | - | |
| Bda01g00611 | 316 | PANTHER | PROTEIN PHOSPHATASE 2C 72-RELATED | 255 | 310 | - | - | |
| Bda01g00611 | 316 | PANTHER | PROTEIN PHOSPHATASE 2C 72-RELATED | 1 | 254 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bda01g00611 | Bda13g01610 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda01g00611 | Bda-Chr1:33108477 | Bda06g00320 | Bda-Chr6:5253823 | 4.42E-84 | dispersed | |
| Bda01g00611 | Bda-Chr1:33108477 | Bda13g01610 | Bda-Chr13:39617835 | 4.01E-91 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda01g00611 | - | - | tcc:18588034 | 353.214 |