Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00765 ATGGAGGAAGATCAAATAGCCAACTTTGTGTCAGCATACTTGAAGAAGAAGGGTTTCAAGGAAGCTGAGCAAGCTTTTCTGGAAGAGCTGCGACTCAATAAGGCTAACTCTTCCTCTTCTCCTTCCATTGACCTTGACTTCTCCAAGCACTTACTCACTGTACCCGAGTTGGAGAATATTCCAGACCGATATCATGACGGATATAGCAGATTACGATCATGGACTGACAGTTCATTAGATTTGTACAAGAAAATGCAGCATGAGTTGCTTCGAGTGCTTTATCCGGTATTTATTCATAGTTTCATGGATCTTGTGGCTAAAGGGCATATTCAAGAAGCTCGGAAATTTTTCAATAGCTTTCGAGAAGATCATGAAATGATGCACTTAAGAGATCTTCAAAAGCTGGAGGGAGTTTTATCTCCCTCACATCTTGAGGAGATGGAGTTTGCTCATTCTCTAAGGCAGAGCAAAGTCAACATAAAGATATGTCAGTACTCTTACGAGCTGCTGCTGCAGTATCTACACAAGAATAAATCCACTACAGTTCTTGGAATTATCAATGAGCGTATTAACTTCAAAGTGTCTCCTGGACAGCCAAGCTCAATTTCTGATGATGCTGAGACAATGACGATTATTGGAAACAATCAAGAAGCATGCAATCTTATAAACAGGAGAGATGTACATTGGGGGTTGCTAGAAGATTCTTTGGAAGAACGCTTGGACAAATCAGGTGGTTTATTCTTAGATTCAGAGAAGGCAGAGGGAGACACGAAAGAAGGGGAGCTTGATGAGAATAAGAAAAGATCAATGGAGGGAGGAAAGCAGGGTGCTTCTCTCAAAAAGGTCAAGAAGGACAAGGCTATTGGATCAATAGGAAAAACTGCACGCCCTGATGGTAGTACTGCCCCTACAGCACCTCGAGTTAAACCAGAGCTGACTTTGCCCGTAATTCCAACGGAGGTGGAAGAGTCAATTCTTGAAGACTTAAGAAACCGTGTCCAGTTGAATAGTGTGGCTCTGCCATCCGTCAGTTTTTACACATTTATCAATACACATAATGGTTTAAATTGTTCGTCAATATCCCATGATGGAGCTTTGGCTGCGGGTGGATTTTCAGATTCCTCACTCAAGGTTTGGGATATAGCAAAGCTTGGACAACAGACCGGCAATTCTGTTTTGCAGGGTGAAACTGACACATTGCTTGGGGATCAAATGCCAGGACAAACTGGTGGGAGAAGATCTTATACATTATTTCAAGGTCATTCAGGGGCAGTTTACTCTGCTACTTTTAGTCCTGTTGGGGATTTTATTCTTTCCTCGTCTGCAGATTCCACAATTCGTTTGTGGAGCACTAAGCTGAATGCTAATCTTGTTTGCTACAAGGGTCACAATTACCCAGTATGGGATGTTCAGTTTAGTCCTATGGGACATTATTTTGCTAGTTCCTCTCATGATCGAACTGCAAGGATTTGGTCAATGGACAGAACACAACCTCTACGCATAATGGCAGGTCATTTGTCAGATGTGGATTGTGTGCAATGGCATGCCAACTGCAACTACATCGCCACAGGATCCAGTGACAAAACAGTGCGACTATGGGATGTGCAGAGTGGAGAATGTGTTCGAATTTTTATTGGTCACAGGAGTATGATTTTATCATTGGCTATGTCTCCCGATGGTCGATATGTTGCATCCGGTGACGAAGATGGGGCTATAATGATGTGGGACCTGTCAAGCGGCCGGTGTGTGTCCCCCATAATGGGACATTCATCGTGTGTTTGGACTCTCGCCTTCAGTTGTGAGGGTTCTCTTCTTGCATCCGGGTCTGCCGATTGCACAGTTAAATTATGGGACGTAAATTCTAGCACGAAAGGACGGAAGATTGACGAACAGTGA 1896 43.35 MEEDQIANFVSAYLKKKGFKEAEQAFLEELRLNKANSSSSPSIDLDFSKHLLTVPELENIPDRYHDGYSRLRSWTDSSLDLYKKMQHELLRVLYPVFIHSFMDLVAKGHIQEARKFFNSFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRQSKVNIKICQYSYELLLQYLHKNKSTTVLGIINERINFKVSPGQPSSISDDAETMTIIGNNQEACNLINRRDVHWGLLEDSLEERLDKSGGLFLDSEKAEGDTKEGELDENKKRSMEGGKQGASLKKVKKDKAIGSIGKTARPDGSTAPTAPRVKPELTLPVIPTEVEESILEDLRNRVQLNSVALPSVSFYTFINTHNGLNCSSISHDGALAAGGFSDSSLKVWDIAKLGQQTGNSVLQGETDTLLGDQMPGQTGGRRSYTLFQGHSGAVYSATFSPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPMGHYFASSSHDRTARIWSMDRTQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLAMSPDGRYVASGDEDGAIMMWDLSSGRCVSPIMGHSSCVWTLAFSCEGSLLASGSADCTVKLWDVNSSTKGRKIDEQ 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34951945 34958903 + Bda002811.1 Bda01g00765 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00765 631 ProSiteProfiles Trp-Asp (WD) repeats profile. 418 450 IPR001680 GO:0005515
Bda01g00765 631 ProSiteProfiles Trp-Asp (WD) repeats profile. 544 585 IPR001680 GO:0005515
Bda01g00765 631 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 1 629 IPR037783 -
Bda01g00765 631 Pfam WD40 associated region in TFIID subunit, NTD2 domain 59 190 IPR007582 -
Bda01g00765 631 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 586 621 - -
Bda01g00765 631 ProSitePatterns Trp-Asp (WD) repeats signature. 521 535 IPR019775 -
Bda01g00765 631 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 502 539 - -
Bda01g00765 631 ProSiteProfiles Trp-Asp (WD) repeats profile. 502 543 IPR001680 GO:0005515
Bda01g00765 631 SMART WD40_4 453 492 IPR001680 GO:0005515
Bda01g00765 631 SMART WD40_4 579 618 IPR001680 GO:0005515
Bda01g00765 631 SMART WD40_4 495 534 IPR001680 GO:0005515
Bda01g00765 631 SMART WD40_4 537 576 IPR001680 GO:0005515
Bda01g00765 631 SMART WD40_4 341 380 IPR001680 GO:0005515
Bda01g00765 631 SMART WD40_4 411 450 IPR001680 GO:0005515
Bda01g00765 631 ProSiteProfiles LIS1 homology (LisH) motif profile. 2 34 IPR006594 GO:0005515
Bda01g00765 631 ProSiteProfiles Trp-Asp (WD) repeats profile. 586 627 IPR001680 GO:0005515
Bda01g00765 631 ProSitePatterns Trp-Asp (WD) repeats signature. 605 619 IPR019775 -
Bda01g00765 631 Gene3D - 548 630 IPR015943 GO:0005515
Bda01g00765 631 CDD WD40 351 618 - -
Bda01g00765 631 PRINTS G protein beta WD-40 repeat signature 437 451 IPR020472 -
Bda01g00765 631 PRINTS G protein beta WD-40 repeat signature 521 535 IPR020472 -
Bda01g00765 631 PRINTS G protein beta WD-40 repeat signature 605 619 IPR020472 -
Bda01g00765 631 MobiDBLite consensus disorder prediction 247 279 - -
Bda01g00765 631 SUPERFAMILY Taf5 N-terminal domain-like 50 195 IPR037264 -
Bda01g00765 631 SUPERFAMILY WD40 repeat-like 342 623 IPR036322 GO:0005515
Bda01g00765 631 ProSitePatterns Trp-Asp (WD) repeats signature. 563 577 IPR019775 -
Bda01g00765 631 Gene3D - 328 458 IPR015943 GO:0005515
Bda01g00765 631 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 544 581 - -
Bda01g00765 631 Gene3D TFIID subunit TAF5, NTD2 domain 44 195 IPR037264 -
Bda01g00765 631 PANTHER CANNONBALL-RELATED 1 629 - -
Bda01g00765 631 ProSiteProfiles Trp-Asp (WD) repeats profile. 460 501 IPR001680 GO:0005515
Bda01g00765 631 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 460 494 - -
Bda01g00765 631 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 418 450 - -
Bda01g00765 631 ProSitePatterns Trp-Asp (WD) repeats signature. 367 381 IPR019775 -
Bda01g00765 631 CDD TAF5_NTD2 61 196 IPR007582 -
Bda01g00765 631 Gene3D - 459 547 IPR015943 GO:0005515
Bda01g00765 631 Pfam WD domain, G-beta repeat 350 380 IPR001680 GO:0005515
Bda01g00765 631 Pfam WD domain, G-beta repeat 418 450 IPR001680 GO:0005515
Bda01g00765 631 Pfam WD domain, G-beta repeat 497 534 IPR001680 GO:0005515
Bda01g00765 631 Pfam WD domain, G-beta repeat 457 492 IPR001680 GO:0005515
Bda01g00765 631 Pfam WD domain, G-beta repeat 580 618 IPR001680 GO:0005515
Bda01g00765 631 Pfam WD domain, G-beta repeat 538 576 IPR001680 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00765 Bda01g00995 CCT
Bda01g00765 Bda13g01268 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00765 Bda-Chr1:34951945 Bda01g01739 Bda-Chr1:53507978 2.48E-09 dispersed
Bda03g00618 Bda-Chr3:5189091 Bda01g00765 Bda-Chr1:34951945 1.61E-09 dispersed
Bda05g00285 Bda-Chr5:44692033 Bda01g00765 Bda-Chr1:34951945 3.16E-08 dispersed
Bda05g01164 Bda-Chr5:59725172 Bda01g00765 Bda-Chr1:34951945 3.73E-23 dispersed
Bda08g01230 Bda-Chr8:50263773 Bda01g00765 Bda-Chr1:34951945 2.34E-18 dispersed
Bda10g00802 Bda-Chr10:42403642 Bda01g00765 Bda-Chr1:34951945 8.43E-10 dispersed
Bda12g00683 Bda-Chr12:33278961 Bda01g00765 Bda-Chr1:34951945 2.37E-16 dispersed
Bda14g00932 Bda-Chr14:7415242 Bda01g00765 Bda-Chr1:34951945 3.01E-13 dispersed
Bda01g00765 Bda-Chr1:34951945 Bda04g00146 Bda-Chr4:3969533 9.69E-16 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00765 K03130 - csv:101214018 1039.64