Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01408 CTTTTCACTTCTAGCAATCGGAGCGGAGGGATGGATTTGAAGAGTGGGAGGGGCAGGCCGAGGTTGGATCGCCGTAATGCGGCCAAGCACATTGAGTACGATGCACTGGCTTCATCTTCTTTGTCTGACGATTCTTCTGGATCGCTGCATACACGTTCGCTTGAGCTTCCGGATAAAACGAGCTTCCGAATAGGGGGAAGTGATGGGGAATTTGATCGTATATGTCGGAGTTTGGGGCTTTCAGGGCCGGACGACTTTACTATTCCTGCGGCGGCGTATCAATCTACGAAGATCCGTTCCTCGTCTGATCGTCTACCCAATTCCAGGCTGCATAGGTTGGATAGCACTTGGGTGGAGGATGTGAAGGAGGAAGAAGACAGTGAAGCGGAAGCTGAAGCGGAAGCTGAGCTACTTGAGAGAGTAAGGGAATCGGTTAAAATTAGGGATTCGACTAAGTTACCTCGTTATGAAACAGCCGAGTTGAGTGGGAACGGGATCGTCACTGGTACTAGTGGAGGAGGAGGAGGTGCTGGTGGTGGAATTAAGGGTGTTCGTCCACCATTGATTAAGCCCCCGCCTTCTATGCGTCCTCCGGTTCATGATAATACTTCCTCAACTTGGGACATTTTCAGGGATTTTGCTCCTAATGATGAAGTAAGACCTTCAGTGGTGGTTCAAGAAGGAAACGATTCTCCTTCCGAAGATAATCACGAAGATGGAGATGAATCCGAAGCGGGGGTCGTGGAACGAGAAGAGGCTGGAGGCACAGGCAGACTTGACGATAGTCTTCGTGAACAGTCAAATTCACCTTCATTTTCAACTTCAAATGATGATGATTCTTCAAGCACAACCACAGAGCCTTATATATCTCCAAATGGTAGACTGAAGCGGACTATTTCGAACTGGGAAAAGGGTGAGCTTCTGGGGCGAGGATCATTTGGATCGGTGTACGAAGGAATTTCTGGTGATGGGTTTTTTTTCGCTGTCAAGGAAGTTTCACTGCTTGATCAAGACAATCAGGGACAACAAAGTATTATACAGCTTCAGCAGGTGAGACAGGCTCTTCATAACGAGATTGCTCTTTTAAGTCACTTTGAGCACGAGAATATAGTGCAATATTACGGCACCGAGAAGACTGAATCACACCTATTCATTTTTCTTGAGCTTGTGACAAAAGGATCCCTTATGAAGCTGTATCAGACGTATCATCTTATAGATTCCCAAGTTTCTGCATATACAAGACAAATTTTGCATGGTTTGAAATATCTTCACGATCAAAACGTGGTTCACAGGGATATTAAATGTGCGAATATATTAGTGGATGCCAGTGGAGCAGTAAAGCTTGCCGATTTTGGGTTGGCAAAGGCAACAAAAATGAATGATATTAAATCCTGTAAGGGAACAGCATTCTGGATGGCACCTGAGGTCGTTAATAGGAAGAACCAAGGATATGGTCACCCAGCTGATATTTGGAGCCTTGGTTGCACCGTACTGGAGATGTTAACAGGCAAACTTCCATACTCTGAGTTGGACAATCCAATGTCGGCATTGTTTAAAATTGGAAGTGGTAAGCCACCAGTTGTTCCAGATTGTCTATCAACAGATGCACGTGATTTTGTACTGCAGTGCTTACAGCCTCACCCACATGACCGTCCATCTGCTGCTCAACTCTTAGAGCATCCATTTGTGAAGAGATCGCTTCCTACTTCCTCAGGGCCTCAGTCGCCTTACTCATCTGGCAGAAGGAAATAA 1752 46.0 LFTSSNRSGGMDLKSGRGRPRLDRRNAAKHIEYDALASSSLSDDSSGSLHTRSLELPDKTSFRIGGSDGEFDRICRSLGLSGPDDFTIPAAAYQSTKIRSSSDRLPNSRLHRLDSTWVEDVKEEEDSEAEAEAEAELLERVRESVKIRDSTKLPRYETAELSGNGIVTGTSGGGGGAGGGIKGVRPPLIKPPPSMRPPVHDNTSSTWDIFRDFAPNDEVRPSVVVQEGNDSPSEDNHEDGDESEAGVVEREEAGGTGRLDDSLREQSNSPSFSTSNDDDSSSTTTEPYISPNGRLKRTISNWEKGELLGRGSFGSVYEGISGDGFFFAVKEVSLLDQDNQGQQSIIQLQQVRQALHNEIALLSHFEHENIVQYYGTEKTESHLFIFLELVTKGSLMKLYQTYHLIDSQVSAYTRQILHGLKYLHDQNVVHRDIKCANILVDASGAVKLADFGLAKATKMNDIKSCKGTAFWMAPEVVNRKNQGYGHPADIWSLGCTVLEMLTGKLPYSELDNPMSALFKIGSGKPPVVPDCLSTDARDFVLQCLQPHPHDRPSAAQLLEHPFVKRSLPTSSGPQSPYSSGRRK 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49972122 49981065 + Bda003650.1 Bda01g01408 1408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01408 583 Coils Coil 121 148 - -
Bda01g01408 583 MobiDBLite consensus disorder prediction 38 55 - -
Bda01g01408 583 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672|GO:0006468
Bda01g01408 583 MobiDBLite consensus disorder prediction 163 293 - -
Bda01g01408 583 Pfam Protein kinase domain 303 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g01408 583 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
Bda01g01408 583 MobiDBLite consensus disorder prediction 14 31 - -
Bda01g01408 583 SMART serkin_6 302 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g01408 583 ProSiteProfiles Protein kinase domain profile. 302 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g01408 583 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 178 573 - -
Bda01g01408 583 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 17 116 - -
Bda01g01408 583 MobiDBLite consensus disorder prediction 1 61 - -
Bda01g01408 583 Gene3D Transferase(Phosphotransferase) domain 1 299 577 - -
Bda01g01408 583 MobiDBLite consensus disorder prediction 261 293 - -
Bda01g01408 583 MobiDBLite consensus disorder prediction 243 259 - -
Bda01g01408 583 SUPERFAMILY Protein kinase-like (PK-like) 277 576 IPR011009 -
Bda01g01408 583 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 17 116 - -
Bda01g01408 583 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 178 573 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g01408 Bda11g00746 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01408 Bda-Chr1:49972122 Bda07g01891 Bda-Chr7:36324652 2.75E-80 dispersed
Bda04g00602 Bda-Chr4:54654699 Bda01g01408 Bda-Chr1:49972122 1.99E-12 dispersed
Bda03g00522 Bda-Chr3:4368655 Bda01g01408 Bda-Chr1:49972122 3.75E-21 transposed
Bda15g00458 Bda-Chr15:7682873 Bda01g01408 Bda-Chr1:49972122 1.38E-146 transposed
Bda01g01408 Bda-Chr1:49972122 Bda11g00746 Bda-Chr11:7499350 0 wgd
Bda01g01408 Bda-Chr1:49972122 Bda03g00518 Bda-Chr3:4354665 5.63E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69448 PF00069 Pkinase 6.10E-67 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01408 K13414 - rcu:8274146 647.891