Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01497 ATGCCAGGTGGGTCTTCATCATCCACATTTTCCCACCTCATCGGAGAATCTTCCGCCGGAGTTGACAGAAGACGATCATCTGAAGCTATACACAATGGCGTTAATTTTCCACATCTTCTTCGTCAAGAATCGCTTGGCCAACAAAGAGATGTTGTTCCCGATCGAGTGGCTTCACCGGAGGAGAATTTCGGTTCGTTTACCGGTAGATCTAAACCGAGGAACTCACCTGCTGGAATTACTAGATACCGGGAATGTCTAAAAAACCATGCCGCGAATGTTGGTGGGAACATTTACGACGGCTGCGGAGAGTTCATGCCGAACGGCGAAGACGGAACCCTAGAAGCCTTGAAATGCGCCGCCTGCGACTGCCACCGTAATTTCCACCGCAAAGAAGTGGACGGCGAGACGCAATTGATCAGTCCGACCTCGAGAAGAACCATTGTCCTCAATCACCTCCAGCTTCCACCGCCATTGCCGTCTCCCCACCACCATAAATTCTCAATGGGCCTGAATTTCCACTCAAGCCCTACCGCTCCGATCGTGGCGCCAATGAACGTCGCATTCGGCGGAAACGAATCCTCAAGCGAAGATTTAAATGTCTTCCATTCCAATGCCGAAGGGGTTCCACACCCACCATTTTCACTCTCGAAGAAAAGGTTCAGAACCAAGTTCACTCAGGAACAGAAGAATAGAATGCTGGAATTCGCAGAGAAAGTGGGGTGGAGAATGCAAAAGCAAAACGAAGAAGAAGTAGACAAGTTCTGCGCAGAAGTAGGAGTAAAGAGACAAGTTCTAAAGGTATGGATGCACAATAACAAAACGACCACCATGAAAAAGCAAAGCGAGAATCATGATCAGACGTTGGAGATCACAGGAGCAGCCGACGAAAGAGATTAG 897 48.83 MPGGSSSSTFSHLIGESSAGVDRRRSSEAIHNGVNFPHLLRQESLGQQRDVVPDRVASPEENFGSFTGRSKPRNSPAGITRYRECLKNHAANVGGNIYDGCGEFMPNGEDGTLEALKCAACDCHRNFHRKEVDGETQLISPTSRRTIVLNHLQLPPPLPSPHHHKFSMGLNFHSSPTAPIVAPMNVAFGGNESSSEDLNVFHSNAEGVPHPPFSLSKKRFRTKFTQEQKNRMLEFAEKVGWRMQKQNEEEVDKFCAEVGVKRQVLKVWMHNNKTTTMKKQSENHDQTLEITGAADERD 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50842309 50843205 + Bda003753.1 Bda01g01497 1497

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01497 298 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 217 273 IPR006455 -
Bda01g01497 298 SUPERFAMILY Homeodomain-like 213 276 IPR009057 -
Bda01g01497 298 MobiDBLite consensus disorder prediction 1 15 - -
Bda01g01497 298 Pfam ZF-HD protein dimerisation region 80 132 IPR006456 -
Bda01g01497 298 MobiDBLite consensus disorder prediction 277 298 - -
Bda01g01497 298 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 82 131 IPR006456 -
Bda01g01497 298 Gene3D - 209 278 - -
Bda01g01497 298 MobiDBLite consensus disorder prediction 275 298 - -
Bda01g01497 298 MobiDBLite consensus disorder prediction 1 76 - -
Bda01g01497 298 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 5 48 280 - -
Bda01g01497 298 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 81 132 IPR006456 -
Bda01g01497 298 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 48 280 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01497 - - - csv:101216040 363.229
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g01497 Bda08g01280 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01497 Bda-Chr1:50842309 Bda11g01865 Bda-Chr11:53736302 1.14E-67 dispersed
Bda06g00545 Bda-Chr6:7721829 Bda01g01497 Bda-Chr1:50842309 1.84E-19 dispersed
Bda06g00184 Bda-Chr6:2514767 Bda01g01497 Bda-Chr1:50842309 4.90E-58 transposed
Bda01g01497 Bda-Chr1:50842309 Bda14g01007 Bda-Chr14:8472491 6.55E-64 wgd
Bda01g01497 Bda-Chr1:50842309 Bda04g00124 Bda-Chr4:2892638 3.24E-55 wgd
Bda01g01497 Bda-Chr1:50842309 Bda08g01280 Bda-Chr8:52070127 4.05E-113 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g953 . . . . . . . . Cmo05g00254 Cmo12g00418 . . . . . . . Bhi04g00174 . . . Hepe10g0633 . . Cla08g01483 Cam08g1972 Cec08g1547 Cco08g1684 Clacu08g1662 . Cre08g1446 Cone4ag1915 Cone7ag1827 Cone17ag1347 Cone20ag0136 . . . Cme03g01952 Blo17g00796 Blo18g00811 Bda08g01280 Bda01g01497 Bpe02g01693 . Bma01g00760 Bma05g00124 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01390 Csa02g02058 Chy03g01454 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda04g00124 . 42 233 ZF-HD Transcription Factor Family AT5G65410 54.7 3.1e-50 195.7
Bda04g00110 . 42 233 ZF-HD Transcription Factor Family AT5G65410 54.7 3.1e-50 195.7
Bda11g00787 . 50 245 ZF-HD Transcription Factor Family AT5G65410 55.3 5.4e-47 184.9
Bda11g00787 . 8 241 ZF-HD Transcription Factor Family AT4G24660 54.9 1.9e-58 222.6
Bda04g00124 . 1 229 ZF-HD Transcription Factor Family AT4G24660 52.1 2.0e-55 212.6
Bda04g00110 . 1 229 ZF-HD Transcription Factor Family AT4G24660 52.1 2.0e-55 212.6
Bda01g01497 BCT 81 275 ZF-HD Transcription Factor Family AT4G24660 51.8 3.6e-44 175.3
Bda06g00184 . 1 289 ZF-HD Transcription Factor Family AT1G14440 50.2 5.5e-56 214.9
Bda14g01007 . 112 314 ZF-HD Transcription Factor Family AT1G75240 50.8 1.7e-41 166.8
Bda12g00161 BCT 24 253 ZF-HD Transcription Factor Family AT5G15210 59.5 7.1e-52 201.1
Bda13g01690 . 10 242 ZF-HD Transcription Factor Family AT5G15210 56.1 2.5e-49 192.6
Bda13g01690 . 16 245 ZF-HD Transcription Factor Family AT3G28920 61.8 4.5e-58 221.9
Bda12g00161 BCT 1 278 ZF-HD Transcription Factor Family AT3G28920 54.3 5.0e-57 218.4
Bda12g00161 BCT 20 264 ZF-HD Transcription Factor Family AT5G39760 53.8 1.1e-51 200.7
Bda13g01690 . 24 264 ZF-HD Transcription Factor Family AT5G39760 53.2 1.5e-51 200.3
Bda07g01353 BCT 60 245 ZF-HD Transcription Factor Family AT1G69600 54.3 3.4e-53 205.3
Bda11g00787 . 8 241 ZF-HD Transcription Factor Family AT4G24660 54.9 1.9e-58 222.6
Bda04g00124 . 1 229 ZF-HD Transcription Factor Family AT4G24660 52.1 2.0e-55 212.6
Bda04g00110 . 1 229 ZF-HD Transcription Factor Family AT4G24660 52.1 2.0e-55 212.6
Bda01g01497 BCT 81 275 ZF-HD Transcription Factor Family AT4G24660 51.8 3.6e-44 175.3
Bda12g00161 BCT 20 264 ZF-HD Transcription Factor Family AT5G39760 53.8 1.1e-51 200.7
Bda13g01690 . 24 264 ZF-HD Transcription Factor Family AT5G39760 53.2 1.5e-51 200.3
Bda04g00124 . 42 233 ZF-HD Transcription Factor Family AT5G65410 54.7 3.1e-50 195.7
Bda04g00110 . 42 233 ZF-HD Transcription Factor Family AT5G65410 54.7 3.1e-50 195.7
Bda11g00787 . 50 245 ZF-HD Transcription Factor Family AT5G65410 55.3 5.4e-47 184.9
Bda07g01353 BCT 60 245 ZF-HD Transcription Factor Family AT1G69600 54.3 3.4e-53 205.3
Bda12g00161 BCT 24 253 ZF-HD Transcription Factor Family AT5G15210 59.5 7.1e-52 201.1
Bda13g01690 . 10 242 ZF-HD Transcription Factor Family AT5G15210 56.1 2.5e-49 192.6
Bda06g00184 . 1 289 ZF-HD Transcription Factor Family AT1G14440 50.2 5.5e-56 214.9
Bda14g01007 . 112 314 ZF-HD Transcription Factor Family AT1G75240 50.8 1.7e-41 166.8
Bda13g01690 . 16 245 ZF-HD Transcription Factor Family AT3G28920 61.8 4.5e-58 221.9
Bda12g00161 BCT 1 278 ZF-HD Transcription Factor Family AT3G28920 54.3 5.0e-57 218.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005524 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15452 PF04770 ZF-HD_dimer 2.50E-29 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01497 Bda_Chr01 FPKM 21.249386 23.829912 9.863927 10.20351 9.182691 8.50142 8.671294 8.667641 8.251565