Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00275 ATGGCGAGGGGGAAGATTCAGATCAAGAGGATAGAGAATCTGACCAACAGGCAGGTCACCTACTCTAAGAGAAGAAAAGGGTTGTTCAAGAAGGCGGAGGAGCTCACTGTTCTCTGCGATGCTAAGGTTTCCCTCATCATGTTTTCTAGCACTGGGAAACTCCATGAATATTTCAGCCCGACTACCACTGAAAAGATGAAAATTTTAACAATCCAGTTTGTTTTTTTGTTGATCAAGGAAGTGGCAGCAGAGGAAGATCCACATTATGGACTAATCGACAGGGGAGGAGGTTGCGACTCCATTACTGGTTTCTCCAATGGAGATCCCCACGTATTTGCACTCAGACTGCAACCTAACCGACCTTATCTGGCCGGAGCAGTCCCAGATCTGCGAACTTATCCCTTGCTCGAGTAA 414 46.62 MARGKIQIKRIENLTNRQVTYSKRRKGLFKKAEELTVLCDAKVSLIMFSSTGKLHEYFSPTTTEKMKILTIQFVFLLIKEVAAEEDPHYGLIDRGGGCDSITGFSNGDPHVFALRLQPNRPYLAGAVPDLRTYPLLE 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2412161 2413581 + Bda016232.2 Bda03g00275 3534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00275 137 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda03g00275 137 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda03g00275 137 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda03g00275 137 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bda03g00275 137 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 65 - -
Bda03g00275 137 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bda03g00275 137 Gene3D - 13 72 IPR036879 GO:0003677|GO:0046983
Bda03g00275 137 PANTHER APETALA3 76 134 - -
Bda03g00275 137 SUPERFAMILY SRF-like 3 65 IPR036879 GO:0003677|GO:0046983
Bda03g00275 137 PANTHER APETALA3 1 65 - -
Bda03g00275 137 CDD MADS_MEF2_like 2 62 IPR033896 GO:0000977|GO:0045944
Bda03g00275 137 PANTHER SERUM RESPONSE FACTOR HOMOLOG 76 134 - -
Bda03g00275 137 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bda03g00275 137 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00508 Bda03g00275 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00275 Bda-Chr3:2412161 Bda04g00032 Bda-Chr4:528368 4.12E-31 dispersed
Bda01g00508 Bda-Chr1:32066294 Bda03g00275 Bda-Chr3:2412161 6.31E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15632 PF00319 SRF-TF 1.50E-24 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00275 K09264 - gmx:547720 115.931