Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00390 ATGGAGGGTGATTCTACTGCGTTGAAAGTATCCGGTCAGGAGGTGGCGGTGCCGGTGGAACTGGAAGGTGGGTTAAATTCAGGCAAAGAAGATAAGGGTGAAAATGATGATGGTGACAAAAACTGTGGCGGAAATCGTTGGCCTCGAGAAGAAACATTGACTTTATTGAAGATTCGCTCTGATATGGATTCAGTTTTTCGTGATTCTACTCTGAAAGGTCCACTGTGGGAAGATGTTTCAAGCTCCATTTTTTATTATGGAAGTATTTACAGGAAGCTGGAAGAGCTTGGGTACAGACGAAGAGCGAAGAAATGCAAAGAGAAATTCGAGAATGTATACAAGTATCACAAGAGGACAAAAGATGGAAGAAACGGGAAAAGATCAGACGCAAAATCCTATAAGTTTTTCAATGAAATTGAAGCTCTTGAGAATCTTCACCCTCAACAATGTCTTCCCAAACCTCATCCACCTCTCACAATTCTTCCTCCATGGACGACAATGAACCAAGTTCATTTTCATCAATCCTTCACTCATCCCTCTTCCGCAGAACCCACCAGCACATTACAAAAACCATCGAATTCAAATTTCCCAGCCACTAAATCAAACCTTATCGACAATATTCCAGAAAACTCCATTTCAAAAGACGGCGATTTTCTTCTCTCGAGCTCGACTTCATCGTCGACTGCGTCGGACGAGGAGCTCGGGGGAAGGCTGAAGAGGAAAAGGAAGTGGAAGGACTTCTTTGCGAGGATGACGAAGGAGGTTATGGCCAAACAAGAGGGTTTGCAGATGAAATTCTTGGAGGCATTGGAGAACATTGAACACCAAAGAGTTGTTAGAGAAGAGAGTAGGAGAATTGAAGAAATGGCAAGAATTAACAAAGAACATGAAATGTTAGTCCAAGAAATTTCCGCTGCAACAGCAAAAGATGCCGCTGTGATTTCATTTTTGCAAAATATCATGTCTAACCAGCCGAATCAGACCCAATCAAAAGGCTATCCTCTTTCGATGCCGCCTTTGTTACAATCTCCGCCTCCACCTGCAATTCCACCACCTAAATTAGAGCTCAAAAGGATAAACAATGGCGGAAATTCGAGCTCAAGATGGCCGAAAGCAGAAGTTCAAGCTCTGATAAGCCTTAGAACTGGTCTTGATATGAAATACCAAGAAAATATACCTAAAGGGCCATTGTGGGAGGACATTTCAGCTGCCATGAAAAAGCTCGGATACAATCGGAGCTCTAAGAGATGCAAAGAAAAATGGGAGAATATAAACAAGTACTTCAAAAAAGTGAAGGAAAGCAACAGGAAAAGGAGTGAAGATTCAAAGACTTGCCTGTATTTTGAGCAGCTTGATGCCATATACAAAGAGAAAAAGAAAACGGAAAGCTCATTCATTCCTCAAATGGTGCCCATGATGGTCCAACCAGAACAACAATGGCCTCCGCCCGAGCAAAAACAGTTAATTAGTGATGGAGAAAATGGGGAACATAATGAAGAAGAAGAGGAGGAAGAAGAAGACCAAGACGGTAGCAGCTTTCAGATTGTAACAAATAAACCAGCTTCCATAAACGCCATCATCAATTGA 1587 42.16 MEGDSTALKVSGQEVAVPVELEGGLNSGKEDKGENDDGDKNCGGNRWPREETLTLLKIRSDMDSVFRDSTLKGPLWEDVSSSIFYYGSIYRKLEELGYRRRAKKCKEKFENVYKYHKRTKDGRNGKRSDAKSYKFFNEIEALENLHPQQCLPKPHPPLTILPPWTTMNQVHFHQSFTHPSSAEPTSTLQKPSNSNFPATKSNLIDNIPENSISKDGDFLLSSSTSSSTASDEELGGRLKRKRKWKDFFARMTKEVMAKQEGLQMKFLEALENIEHQRVVREESRRIEEMARINKEHEMLVQEISAATAKDAAVISFLQNIMSNQPNQTQSKGYPLSMPPLLQSPPPPAIPPPKLELKRINNGGNSSSRWPKAEVQALISLRTGLDMKYQENIPKGPLWEDISAAMKKLGYNRSSKRCKEKWENINKYFKKVKESNRKRSEDSKTCLYFEQLDAIYKEKKKTESSFIPQMVPMMVQPEQQWPPPEQKQLISDGENGEHNEEEEEEEEDQDGSSFQIVTNKPASINAIIN 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3228468 3230407 - Bda016353.1 Bda03g00390 3649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00390 528 ProSiteProfiles Myb-like domain profile. 361 425 IPR001005 -
Bda03g00390 528 Pfam Myb/SANT-like DNA-binding domain 367 454 IPR044822 -
Bda03g00390 528 Pfam Myb/SANT-like DNA-binding domain 45 142 IPR044822 -
Bda03g00390 528 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 25 509 - -
Bda03g00390 528 MobiDBLite consensus disorder prediction 473 528 - -
Bda03g00390 528 MobiDBLite consensus disorder prediction 1 47 - -
Bda03g00390 528 SMART sant 365 427 IPR001005 -
Bda03g00390 528 SMART sant 43 115 IPR001005 -
Bda03g00390 528 MobiDBLite consensus disorder prediction 176 207 - -
Bda03g00390 528 MobiDBLite consensus disorder prediction 511 528 - -
Bda03g00390 528 CDD GT1 45 120 - -
Bda03g00390 528 MobiDBLite consensus disorder prediction 25 47 - -
Bda03g00390 528 MobiDBLite consensus disorder prediction 495 510 - -
Bda03g00390 528 Gene3D - 369 430 - -
Bda03g00390 528 Gene3D - 47 118 - -
Bda03g00390 528 CDD GT1 367 432 - -
Bda03g00390 528 Coils Coil 289 309 - -
Bda03g00390 528 PANTHER - 25 509 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda03g00390 Bda11g00876 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00390 Bda-Chr3:3228468 Bda11g00876 Bda-Chr11:8614273 1.59E-139 dispersed
Bda07g00837 Bda-Chr7:9830244 Bda03g00390 Bda-Chr3:3228468 8.48E-13 transposed
Bda11g00875 Bda-Chr11:8606211 Bda03g00390 Bda-Chr3:3228468 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15645 PF13837 Myb_DNA-bind_4 6.10E-15 CL0123 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00390 - - tcc:18592609 449.129