Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00032 ATGGGGCGTGGAAAGATCGAGATCAAGCGGATCGAAAACTCCACAAACAGGCAGGTCACCTACTCCAAACGAAGAAATGGTATTTTCAAGAAAGCTAAAGAACTGGCTGTTCTTTGCGATGCTAAGGTCTCTCTTTTGATGTTCTCTGATACTGGCAAGCTTCACGAGTATACTAGCCTTAACACCACAACAAAGAAGATCTACGATCAGTATCAGCGTGTTACAGGGATTGATCTGTGGAGCACACACTATAAGAGAATGGAAGAAAACTTGAGGAGGTTGAAGGAAATCAACTACAACTTGAGGAGGGAGATCAGGCAGAGGATAGGCAAAGATTTGAACGATCTTGACTACAAGCAACTCCATAGTCTTGAGCAAAACATATCTTCTCCCTTGAAAGCCATACGCGAGCGAAAGGTTCAGTTCCTCAACTTCTGA 438 43.61 MGRGKIEIKRIENSTNRQVTYSKRRNGIFKKAKELAVLCDAKVSLLMFSDTGKLHEYTSLNTTTKKIYDQYQRVTGIDLWSTHYKRMEENLRRLKEINYNLRREIRQRIGKDLNDLDYKQLHSLEQNISSPLKAIRERKVQFLNF 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 528368 529082 - Bda018794.1 Bda04g00032 5054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00032 145 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 141 - -
Bda04g00032 145 ProSiteProfiles K-box domain profile. 84 145 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda04g00032 145 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bda04g00032 145 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Bda04g00032 145 PANTHER FLORAL HOMEOTIC PROTEIN DEFICIENS ISOFORM X1 1 141 - -
Bda04g00032 145 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bda04g00032 145 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda04g00032 145 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda04g00032 145 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda04g00032 145 Coils Coil 84 104 - -
Bda04g00032 145 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Bda04g00032 145 Pfam K-box region 81 143 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda04g00032 145 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Bda04g00032 145 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bda04g00032 145 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda04g00032 Bda10g00169 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00508 Bda-Chr1:32066294 Bda04g00032 Bda-Chr4:528368 3.28E-63 dispersed
Bda01g00675 Bda-Chr1:33914706 Bda04g00032 Bda-Chr4:528368 2.83E-45 dispersed
Bda03g00275 Bda-Chr3:2412161 Bda04g00032 Bda-Chr4:528368 4.12E-31 dispersed
Bda04g00032 Bda-Chr4:528368 Bda01g02119 Bda-Chr1:57227731 7.38E-36 dispersed
Bda15g00924 Bda-Chr15:16045111 Bda04g00032 Bda-Chr4:528368 1.15E-31 transposed
Bda10g00169 Bda-Chr10:5046312 Bda04g00032 Bda-Chr4:528368 1.87E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15777 PF01486 K-box 1.10E-13 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00032 K09264 - twl:120002789 212.616