Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00110 ATGGTGGGCAGTTCATCGTATAATTTCATAGAACAAGAGACGAGTTACGGCATGAATTTAACACCAGATGATGATCTTCTAAGTTTTTTTCAAAGCTTAGAAGATGTCGGAGAATTTCCCATTATAGACGACGAAGCCATCGCCATTCGTGCTAGTTTTAAGGAATTTGAAGGAACAGCGTGGAGATCATATCATCGAAACGCATCGTCTGCCATTACTGTGCAGCAGGTCAGTTTAGAGAGAGAAACTGAGCTTGAAATCTCGCTAGAAAGAAAGAGGTGGATCTTGAAACACAGCCGAGAAAATCAGCCTTCTTTTTCTAGGGAAACAAACACAAATGGAGGTCAAAAGAGGTCCCATATAGCAGTGGAGAGGAACAGACGAAAACAGATGAACGATCATTTGTCTGTGTTGAAGTCTCTTCTGCCTTCTTTCTATGTCCAGAAGGGAGATCAAGCTTCTATTGTTGGAGGTGTAGTGAGTTACATCAACGAGTTGGAGCAAATTTTAAAAACTCTAGAGGGGAAGAAGAAGAGAAAGATTTGCAGTAAAGACAGTTTCTTAAACCCTAGTTCTAGAGCCTCGCCAATGCTAAGTCCTAGGACCCCACAAAAGAACAGTAGCTCATATCAGCTGCCATGGCTGCACAAAGCTCCATGCTATGTCTTTTCCGATCCTTCCAATCTGGCTAATTCAGTCGACCCATCTCCTTCTTCTTCCTCCTCTACCAGTTCTTCATTTGTTGATGGCTGCAATGAGCTTTTCGCTGCTACCTCTAAGTCTGCTCTGGCTGAAGTTGAAGTGAGATTTACAGGTCCTAATTTGCTTTTGAGGACTGTTTCTTCTTCTCGTTTTCCTGGTCAAGTTTTGAAAATAATGGCTGCCATTGAAGACCTCTCACTTGAAATTCTTCACTTGACCATCTCTACCAATGAAGACACTACGGTCAATACCTTCACCATTAAGATTGGAATTGAATGCAAAATTAGTGCTGAGGAACTGGCTTACAACATCCAGCATACATTCTGCTAA 1032 41.96 MVGSSSYNFIEQETSYGMNLTPDDDLLSFFQSLEDVGEFPIIDDEAIAIRASFKEFEGTAWRSYHRNASSAITVQQVSLERETELEISLERKRWILKHSRENQPSFSRETNTNGGQKRSHIAVERNRRKQMNDHLSVLKSLLPSFYVQKGDQASIVGGVVSYINELEQILKTLEGKKKRKICSKDSFLNPSSRASPMLSPRTPQKNSSSYQLPWLHKAPCYVFSDPSNLANSVDPSPSSSSSTSSSFVDGCNELFAATSKSALAEVEVRFTGPNLLLRTVSSSRFPGQVLKIMAAIEDLSLEILHLTISTNEDTTVNTFTIKIGIECKISAEELAYNIQHTFC 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5386189 5387709 + Bda020722.1 Bda05g00110 6422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00110 343 MobiDBLite consensus disorder prediction 105 119 - -
Bda05g00110 343 Pfam Helix-loop-helix DNA-binding domain 116 167 IPR011598 GO:0046983
Bda05g00110 343 MobiDBLite consensus disorder prediction 185 206 - -
Bda05g00110 343 Gene3D - 107 180 IPR036638 GO:0046983
Bda05g00110 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 114 182 IPR036638 GO:0046983
Bda05g00110 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 115 166 IPR011598 GO:0046983
Bda05g00110 343 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 7 343 - -
Bda05g00110 343 MobiDBLite consensus disorder prediction 100 120 - -
Bda05g00110 343 PANTHER TRANSCRIPTION FACTOR FAMA 7 343 IPR044283 GO:0003700|GO:0010052
Bda05g00110 343 SMART finulus 121 172 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda05g00110 Bda15g00775 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00110 Bda-Chr5:5386189 Bda13g00490 Bda-Chr13:5769953 1.11E-43 dispersed
Bda11g00562 Bda-Chr11:5822685 Bda05g00110 Bda-Chr5:5386189 1.23E-52 transposed
Bda15g00775 Bda-Chr15:11598979 Bda05g00110 Bda-Chr5:5386189 3.74E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15861 PF00010 HLH 2.90E-11 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00110 K20558 - rcu:8274388 261.151