Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00116 ATGATCTATGCTGTTCTTATCCTCTTCCATCTCCATTGCTGTCCTGTTTCTTCTTCTCCTCAATCTGAGCTTGGTGTGTGGGCAGTGGTAAAGAAGTACCTGTTTTCCAATTTTCTGATTGATGTTCTTTCTGCTCTTCCACTCCCACAGGTGATATTTCTACTAGCTATTCCAAAGTTATGGAGCTCTTCACTTTGGATTGCACTGAGGTCATTGAAATTTATCCTTTTGTTCCAATTTGTGCCACGGGTTCTTCGAATCTATGCATTTCTAAGGAAAGTTACATGGACTGCTGGTATATTTTTTCCTGAAAGTCCAGGGGGTAGAGCTGTACTTAATCTCTTTCTTTACATGCTTGCAAGCCATGTTTTTGGAGCCTTTTGGTACTTGTTTTCGATTGAACGAAAAATTTCATGCTGGCAAGGCACTTGTGTCAAGCACACTGCTCAATCTTGCTCTTTAAATTGCGATAGAAACTCGACAAACACTTCACTCCTGAATGGTATTTGTGTCGATTATTCACGAAATAGTTTTGGAATTTTTGCTGCTGCCTTTGAATCTGGCGTGGTTAATTCTAGAGAGTTTGTCAAGAAGATATCTTTTTGCTACTGGTGGGGACTTCGGAATCTAAGTTCACTTGGTCAAAACCTAAAAACAAGCACATTCATATGGGAAATATACTTTGCTGCCTTAATATCGACTTTCGGCTTACTTTTATTCGCCTTTCTAATTGGAAATTTGCAGACATACCTTAGGAGCAGCATTGCAAGGCTAGAGGAAATGAGAGTTAAAGGAGAGGACATTGAACTATGGTTGGCTTTTCATTCTCTTCCAAGAAATTTGAAAACTCAGATAAAAAAATACGAAAAATTCAAATGGCGTAGCACAAAAGGTATCGACATCGAGAGTCTACTTGTTGATCTCCCGAGAGATCTTCGAAGAGAGACAAAGCGACATCTCTGCGAAATTTCGATCACAAGCGTGCCAATTCTCCGAAACATGGATCAAAAGTTAATTGATGCAATTTACGATCATCTCAAACCGACATTATATATTGAGCACACGTTCATTGTACGAGAAGGCGAGCCGTTGGATGAGATAATATTCATAATACGAGGCCAAATACGGACTTACAGTGCCGGCATGGGAAATTCAACCGAGTACTTAACAAAAGGCCAGTTTTATGGGGAAGATCTTCTAGATTGGGCACTATCTACACCATTTGCGGTTAGTAGTGTCTCTGCCTCTACAAAAACGGTAACAGCACATACAAAGACAGAGGCCTTTGTTTTGAGAGCACATGACCTTAAAATTCTGGTTTCTAAATTTTGGTGGCTTTTTAGTAGAGAGTTAGGACACTGCCCTAAATTTAGACAGAACTGGGCTCCTTTTGCTGCCCTTATTTTACAGTCAGCTTGGCGGCGGTACTGCATAAATAAGGTAATGCTGACAAACCAGACGGATAAAGAAGGGGATTATTCATCCAGTTCGAGGCCCGCAGTTAAGATGTTTGGGCTCGTGGGTAAAGTCATGGGGAACCTAAGGCAGAAGAAAGCTAACAGGGGTTCTTCGGAGTCGAGCTAA 1584 40.97 MIYAVLILFHLHCCPVSSSPQSELGVWAVVKKYLFSNFLIDVLSALPLPQVIFLLAIPKLWSSSLWIALRSLKFILLFQFVPRVLRIYAFLRKVTWTAGIFFPESPGGRAVLNLFLYMLASHVFGAFWYLFSIERKISCWQGTCVKHTAQSCSLNCDRNSTNTSLLNGICVDYSRNSFGIFAAAFESGVVNSREFVKKISFCYWWGLRNLSSLGQNLKTSTFIWEIYFAALISTFGLLLFAFLIGNLQTYLRSSIARLEEMRVKGEDIELWLAFHSLPRNLKTQIKKYEKFKWRSTKGIDIESLLVDLPRDLRRETKRHLCEISITSVPILRNMDQKLIDAIYDHLKPTLYIEHTFIVREGEPLDEIIFIIRGQIRTYSAGMGNSTEYLTKGQFYGEDLLDWALSTPFAVSSVSASTKTVTAHTKTEAFVLRAHDLKILVSKFWWLFSRELGHCPKFRQNWAPFAALILQSAWRRYCINKVMLTNQTDKEGDYSSSSRPAVKMFGLVGKVMGNLRQKKANRGSSESS 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5709074 5712130 + Bda020732.1 Bda05g00116 6428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00116 527 ProSiteProfiles cAMP/cGMP binding motif profile. 330 416 IPR000595 -
Bda05g00116 527 SUPERFAMILY Voltage-gated potassium channels 29 252 - -
Bda05g00116 527 Gene3D Helix hairpin bin 256 321 - -
Bda05g00116 527 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 2 512 - -
Bda05g00116 527 SMART cnmp_10 330 455 IPR000595 -
Bda05g00116 527 CDD CAP_ED 330 436 IPR000595 -
Bda05g00116 527 Pfam Ion transport protein 2 251 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bda05g00116 527 Gene3D Jelly Rolls 328 444 IPR014710 -
Bda05g00116 527 Gene3D - 1 253 - -
Bda05g00116 527 SUPERFAMILY cAMP-binding domain-like 260 444 IPR018490 -
Bda05g00116 527 PANTHER CYCLIC NUCLEOTIDE-GATED CHANNEL 21 2 512 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda05g00116 Bda15g00779 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00116 Bda-Chr5:5709074 Bda05g00152 Bda-Chr5:6374711 0 dispersed
Bda05g00113 Bda-Chr5:5661048 Bda05g00116 Bda-Chr5:5709074 4.80E-140 proximal
Bda05g00115 Bda-Chr5:5688227 Bda05g00116 Bda-Chr5:5709074 3.62E-64 tandem
Bda05g00116 Bda-Chr5:5709074 Bda05g00117 Bda-Chr5:5715619 1.48E-94 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00116 K05391 - csv:101212985 525.398