Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00520 ATGGATGGGAGAGAAGCTATGGCTCTTTCTGGTGGTTCAGCTTCATATTACATTCACAGAGGAGGTTTTAGTGGGCCTGGTTTGGGAAATCAGACCCCCAGTCTGCACTCCACACAGGATTTCACGCCATTTTCGAACTCCACCATTCCCACTCAGCCAAATGCTCGGTGTGGCTCAGTAGGACCGGCGTTTTCAGTTGAGTCTTCGCAGGGGAATTACTCTCTTGGCATTAATGTGGGAGCGTCAGCCGGATCACCCGCTAGTGAACCAGTGCGGAAGAAAAGAGGTAGGCCTCGGAAATACGTACCTGACGGGCCAGTTTCACTGGGACTGTCTCCGATGTCTGTTGATTCCAATCAAAGCTCTGGTCCGAATTCAGTGAACCCTAAACGGCCTAGGGGAAGACCGCCTGGTTCTGGAAGGAAACAACAATTAGCGTTGCTTGGTGAATGGATGGACAGTTCAGCTGGACAAGCTTTTGCGCCTCATGTCATGCACATTGGAGCAGGAATGGACATTGTTGCAAAAATATTGTCATTTTCGCAACAGAAGGGAAGAGCTGTTTGCATAATGTCTGGAAATGGTACAGTTTCTTCGATGACACTTCGTCAACCCGCATCCCCGGAGGTGGGCCGAAACTTTGAGGGGCGATTCCAGATATTGTGTTTATCGGGTTCTTACTTGATCTCTAAAGATGGAGCCCCGCAAAATCGAACTGGGGGAGTAAGTGTTTCTCTTGCCAGTCCTGACGGTCAGGTGATTGGCGGCGCTGTTGATTCGCTCATTGCAGCTGCCCCTGTTCAGGTAATAGTATCGAGTTTTGTTTATGGCGGTTCAAAGACAAAGAAGAAGAACAAGCAAGTTTCCGCTCCAAAAAGTGATGACAGTTCCGAGCCTCAACCCAGTGATGAATTAGCTCCGCAGTCAACCACTCCCGATCAAACTTACGCTCCATCTACAACCGGGTTTTGGCCAGGTTCCCGTCCCGTCCTCAAAAACCCTCATTCCGGCATCGATTTAAGGCGAGGATGA 1032 49.81 MDGREAMALSGGSASYYIHRGGFSGPGLGNQTPSLHSTQDFTPFSNSTIPTQPNARCGSVGPAFSVESSQGNYSLGINVGASAGSPASEPVRKKRGRPRKYVPDGPVSLGLSPMSVDSNQSSGPNSVNPKRPRGRPPGSGRKQQLALLGEWMDSSAGQAFAPHVMHIGAGMDIVAKILSFSQQKGRAVCIMSGNGTVSSMTLRQPASPEVGRNFEGRFQILCLSGSYLISKDGAPQNRTGGVSVSLASPDGQVIGGAVDSLIAAAPVQVIVSSFVYGGSKTKKKNKQVSAPKSDDSSEPQPSDELAPQSTTPDQTYAPSTTGFWPGSRPVLKNPHSGIDLRRG 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5238190 5240372 + Bda024975.1 Bda08g00520 11376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00520 343 Pfam Plants and Prokaryotes Conserved (PCC) domain 162 275 IPR005175 -
Bda08g00520 343 MobiDBLite consensus disorder prediction 292 322 - -
Bda08g00520 343 CDD DUF296 162 274 IPR005175 -
Bda08g00520 343 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 341 - -
Bda08g00520 343 MobiDBLite consensus disorder prediction 112 128 - -
Bda08g00520 343 MobiDBLite consensus disorder prediction 282 343 - -
Bda08g00520 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 341 IPR039605 GO:0003680
Bda08g00520 343 Gene3D - 162 290 - -
Bda08g00520 343 MobiDBLite consensus disorder prediction 27 55 - -
Bda08g00520 343 SUPERFAMILY AF0104/ALDC/Ptd012-like 158 276 - -
Bda08g00520 343 ProSiteProfiles PPC domain profile profile. 157 296 IPR005175 -
Bda08g00520 343 PRINTS AT-hook-like domain signature 92 102 IPR017956 GO:0003677
Bda08g00520 343 PRINTS AT-hook-like domain signature 128 139 IPR017956 GO:0003677
Bda08g00520 343 MobiDBLite consensus disorder prediction 77 142 - -
Bda08g00520 343 MobiDBLite consensus disorder prediction 20 55 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda08g00520 Bda11g00244 CCT
Bda08g00520 Bda13g00351 CCT
Bda08g00520 Bda13g00351 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00109 Bda-Chr6:1516596 Bda08g00520 Bda-Chr8:5238190 2.61E-49 dispersed
Bda06g01048 Bda-Chr6:36839824 Bda08g00520 Bda-Chr8:5238190 1.54E-16 dispersed
Bda08g00520 Bda-Chr8:5238190 Bda15g00752 Bda-Chr15:11110255 3.86E-52 dispersed
Bda08g00520 Bda-Chr8:5238190 Bda11g00244 Bda-Chr11:2898066 7.59E-92 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00520 - - zju:107429897 411.379