Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda09g00411 | ATGGCATCCACTTCGGATTCATGGGTGAAGGAATATAATGAAGCAGTGAAACTTGCTGATGATATCAATGGAATGATCTCTGAGCGTAGTTCGGTTTCTGTATCTGGACCAGAAGCTCAGCGTTATGCCTCTGCTATTCGCAGAAAGATCACAATATTGGGAACGAGGCTTGATAGCCTACTGGCCCTCTTGTCTAGAATTCCTGGAAAACCCATCTCTGATAAAGAGATGAATCGCCGGAGGGACATGGTTACAAATTTAAGATCAAAAGTTAACCAAATGGCCTCACAATTGAACATGTCAAACTTTGCTAATCGGGACAGCTTGCTTGGTCCAGAAATAAAAGCAGCTGATCCCATGAACAGAACAGTAGGCCTGGACAACCAAGGACTAGTTGGTTTACAACGACAAATTATAAAAGAACAAGACGAGGACCTTCAAAAGCTGGAGGAGACTGTAATAAGTACAAAACATATTGCTTTGGCAGTCAATGAAGAACTTGACCTTCACACCAGACTAATTGATGACTTGGATCAACACGTAGATGTCACTGACTCTCGATTACGGCGAGTGCAGAAGAACCTAGCAATTTTAAACAAGCGTACCAAAGGAGGTTGCTCGTGCTTGTGCATGCTTTTATCGGTTGTCGGAATCGTGATTCTGGTTGTTGTCATATATCTTCTCGTCAGGTATTTGTAA | 699 | 42.49 | MASTSDSWVKEYNEAVKLADDINGMISERSSVSVSGPEAQRYASAIRRKITILGTRLDSLLALLSRIPGKPISDKEMNRRRDMVTNLRSKVNQMASQLNMSNFANRDSLLGPEIKAADPMNRTVGLDNQGLVGLQRQIIKEQDEDLQKLEETVISTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCSCLCMLLSVVGIVILVVVIYLLVRYL | 232 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 5111043 | 5112781 | + | Bda030989.1 | Bda09g00411 | 12661 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda09g00411 | 232 | PANTHER | TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED | 1 | 226 | - | - | |
| Bda09g00411 | 232 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 136 | 198 | IPR000727 | - | |
| Bda09g00411 | 232 | SUPERFAMILY | t-snare proteins | 19 | 99 | IPR010989 | GO:0016020|GO:0016192 | |
| Bda09g00411 | 232 | Pfam | SNARE domain | 173 | 224 | IPR000727 | - | |
| Bda09g00411 | 232 | PANTHER | SYNTAXIN | 1 | 226 | IPR045242 | - | |
| Bda09g00411 | 232 | SMART | tSNARE_6 | 131 | 198 | IPR000727 | - | |
| Bda09g00411 | 232 | CDD | SNARE_Qc | 139 | 196 | - | - | |
| Bda09g00411 | 232 | Gene3D | - | 138 | 200 | - | - | |
| Bda09g00411 | 232 | SUPERFAMILY | SNARE fusion complex | 127 | 197 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bda05g00693 | Bda09g00411 | CCT | |
| Bda07g00381 | Bda09g00411 | BCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda09g00411 | Bda-Chr9:5111043 | Bda07g00367 | Bda-Chr7:4669492 | 6.63E-08 | dispersed | |
| Bda09g00403 | Bda-Chr9:5049766 | Bda09g00411 | Bda-Chr9:5111043 | 2.37E-06 | proximal | |
| Bda05g00693 | Bda-Chr5:55214811 | Bda09g00411 | Bda-Chr9:5111043 | 6.44E-107 | wgd | |
| Bda07g00381 | Bda-Chr7:4808229 | Bda09g00411 | Bda-Chr9:5111043 | 1.24E-128 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda09g00411 | K08503 | - | cit:102608030 | 363.229 |