Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00169 ATGGGGCGTGGGAAAATCGAAATCAAGAGGATCGAAAACGCTACGAACAAGCAGGTTACCTACTCGAAAAGAAGAAATGGTCTTTTTAAGAAAGCCAAAGAACTTTCTGTTCTTTGCGATGCAAAGGTCTCCATTATCATGTTCTCTATTACTGGCAAGTTTCATGAAACGAAGAAGATCTATGATCAGTATCAGCGAACTTTGGGGATTGATCTGTGGAGCTCGCACTATAAGAGAATGGAAGAAAACTTGAGGAAACTGAAGGAAATCAACTACAAACTGAGGACAGAGATTAGGCAAAGAATTGGCAAAGATTTACATGATCTAGACTTCAAGCAACTGCATAGTCTCGAGCAGAAGATATCTTCTCCATTGGCAGCCATACGCGCCAGAAAGGTTTAA 402 40.8 MGRGKIEIKRIENATNKQVTYSKRRNGLFKKAKELSVLCDAKVSIIMFSITGKFHETKKIYDQYQRTLGIDLWSSHYKRMEENLRKLKEINYKLRTEIRQRIGKDLHDLDFKQLHSLEQKISSPLAAIRARKV 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5046312 5047130 + Bda006654.1 Bda10g00169 14057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00169 133 Gene3D - 13 89 IPR036879 GO:0003677|GO:0046983
Bda10g00169 133 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Bda10g00169 133 ProSiteProfiles K-box domain profile. 77 133 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda10g00169 133 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Bda10g00169 133 Coils Coil 70 97 - -
Bda10g00169 133 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Bda10g00169 133 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda10g00169 133 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda10g00169 133 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda10g00169 133 Pfam K-box region 74 132 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda10g00169 133 ProSiteProfiles MADS-box domain profile. 1 56 IPR002100 GO:0003677|GO:0046983
Bda10g00169 133 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bda10g00169 133 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 132 - -
Bda10g00169 133 PANTHER FLORAL HOMEOTIC PROTEIN DEFICIENS ISOFORM X1 1 132 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda04g00032 Bda10g00169 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00169 Bda-Chr10:5046312 Bda08g00226 Bda-Chr8:2229689 4.70E-31 dispersed
Bda15g00924 Bda-Chr15:16045111 Bda10g00169 Bda-Chr10:5046312 1.44E-24 dispersed
Bda10g00169 Bda-Chr10:5046312 Bda04g00032 Bda-Chr4:528368 1.87E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16483 PF01486 K-box 2.80E-12 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00169 K09264 - vvi:100233014 204.142