Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda10g00172 | ATGCGGACACTTTGCGACGCCTGTGAAAGCGCTGCCGCCGCTGTTTTTTGCGCCGCCGATGAAGCCGCCCTCTGCCGATCCTGCGACGAGAAGGTTCATATGTGCAACAAACTCGCAAGCCGACATGTTCGAGTTGGCCTAGCAAAGCCCTGTGATGTCAATCGGTGTGATATATGCGAAAATGCACCTGCTTTCTTTTACTGCGAGATTGATGGGAGTTCGCTGTGTTTGCAATGCGATATGATTGTTCATGTTGGAGGTAAAAGAACACACAAAAGATACCTTCTACTAAGGCAGAGAGTTGAGTTTCCGGGCGATAAAGCTATTAATATCAATGATTCTTCTCCACAACCAATGGATCCAGGCGAAACCAAGAGACAGAGTCAGCAAAGTAAGGGGACAGTGGGGGACAATCGAGAAAATCATATGATATCTCCACCAAATGTCGATGGACATTCGAACAATGGAGCTAAAATGATTGATCTGAATATGAAGCCTCATAGAATTCATGGCCAAGCTTCAAATAATCAGGTTAGACTGTTTTGTTTTTGCCACTTGCTCTCAATCAACTTTACTAATTTCCATAAAATGGAAACTTCAAATGACTCTTTGATTGGAATCAAATTGTTTTTCTTTTATTGGTCGGTGATCTGTTTCTGGCTTATCAAGATCTTTCTTAATTAG | 684 | 42.69 | MRTLCDACESAAAAVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLAKPCDVNRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKAININDSSPQPMDPGETKRQSQQSKGTVGDNRENHMISPPNVDGHSNNGAKMIDLNMKPHRIHGQASNNQVRLFCFCHLLSINFTNFHKMETSNDSLIGIKLFFFYWSVICFWLIKIFLN | 227 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 5344462 | 5346094 | + | Bda006659.1 | Bda10g00172 | 14060 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda10g00172 | 227 | CDD | Bbox1_BBX-like | 4 | 47 | - | - | |
Bda10g00172 | 227 | ProSiteProfiles | Zinc finger B-box type profile. | 51 | 96 | IPR000315 | GO:0008270 | |
Bda10g00172 | 227 | MobiDBLite | consensus disorder prediction | 110 | 138 | - | - | |
Bda10g00172 | 227 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
Bda10g00172 | 227 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 179 | - | - | |
Bda10g00172 | 227 | CDD | Bbox1_BBX-like | 56 | 96 | - | - | |
Bda10g00172 | 227 | Pfam | B-box zinc finger | 3 | 42 | IPR000315 | GO:0008270 | |
Bda10g00172 | 227 | Pfam | B-box zinc finger | 53 | 92 | IPR000315 | GO:0008270 | |
Bda10g00172 | 227 | MobiDBLite | consensus disorder prediction | 107 | 150 | - | - | |
Bda10g00172 | 227 | SMART | bboxneu5 | 1 | 47 | IPR000315 | GO:0008270 | |
Bda10g00172 | 227 | SMART | bboxneu5 | 51 | 96 | IPR000315 | GO:0008270 | |
Bda10g00172 | 227 | Gene3D | Classic Zinc Finger | 2 | 96 | - | - | |
Bda10g00172 | 227 | PANTHER | B-BOX ZINC FINGER PROTEIN 19 | 1 | 179 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bda10g00172 | Bda11g01843 | CCT | |
Bda10g00172 | Bda11g01843 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda10g00172 | Bda-Chr10:5344462 | Bda14g00989 | Bda-Chr14:8030086 | 1.98E-78 | dispersed | |
Bda10g00172 | Bda-Chr10:5344462 | Bda11g01843 | Bda-Chr11:53635914 | 5.29E-89 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16484 | PF00643 | zf-B_box | 2.00E-05 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda10g00172 | - | - | tcc:18610806 | 290.041 |