Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00172 ATGCGGACACTTTGCGACGCCTGTGAAAGCGCTGCCGCCGCTGTTTTTTGCGCCGCCGATGAAGCCGCCCTCTGCCGATCCTGCGACGAGAAGGTTCATATGTGCAACAAACTCGCAAGCCGACATGTTCGAGTTGGCCTAGCAAAGCCCTGTGATGTCAATCGGTGTGATATATGCGAAAATGCACCTGCTTTCTTTTACTGCGAGATTGATGGGAGTTCGCTGTGTTTGCAATGCGATATGATTGTTCATGTTGGAGGTAAAAGAACACACAAAAGATACCTTCTACTAAGGCAGAGAGTTGAGTTTCCGGGCGATAAAGCTATTAATATCAATGATTCTTCTCCACAACCAATGGATCCAGGCGAAACCAAGAGACAGAGTCAGCAAAGTAAGGGGACAGTGGGGGACAATCGAGAAAATCATATGATATCTCCACCAAATGTCGATGGACATTCGAACAATGGAGCTAAAATGATTGATCTGAATATGAAGCCTCATAGAATTCATGGCCAAGCTTCAAATAATCAGGTTAGACTGTTTTGTTTTTGCCACTTGCTCTCAATCAACTTTACTAATTTCCATAAAATGGAAACTTCAAATGACTCTTTGATTGGAATCAAATTGTTTTTCTTTTATTGGTCGGTGATCTGTTTCTGGCTTATCAAGATCTTTCTTAATTAG 684 42.69 MRTLCDACESAAAAVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLAKPCDVNRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKAININDSSPQPMDPGETKRQSQQSKGTVGDNRENHMISPPNVDGHSNNGAKMIDLNMKPHRIHGQASNNQVRLFCFCHLLSINFTNFHKMETSNDSLIGIKLFFFYWSVICFWLIKIFLN 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5344462 5346094 + Bda006659.1 Bda10g00172 14060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00172 227 CDD Bbox1_BBX-like 4 47 - -
Bda10g00172 227 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Bda10g00172 227 MobiDBLite consensus disorder prediction 110 138 - -
Bda10g00172 227 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bda10g00172 227 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 179 - -
Bda10g00172 227 CDD Bbox1_BBX-like 56 96 - -
Bda10g00172 227 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Bda10g00172 227 Pfam B-box zinc finger 53 92 IPR000315 GO:0008270
Bda10g00172 227 MobiDBLite consensus disorder prediction 107 150 - -
Bda10g00172 227 SMART bboxneu5 1 47 IPR000315 GO:0008270
Bda10g00172 227 SMART bboxneu5 51 96 IPR000315 GO:0008270
Bda10g00172 227 Gene3D Classic Zinc Finger 2 96 - -
Bda10g00172 227 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 179 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda10g00172 Bda11g01843 CCT
Bda10g00172 Bda11g01843 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00172 Bda-Chr10:5344462 Bda14g00989 Bda-Chr14:8030086 1.98E-78 dispersed
Bda10g00172 Bda-Chr10:5344462 Bda11g01843 Bda-Chr11:53635914 5.29E-89 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16484 PF00643 zf-B_box 2.00E-05 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00172 - - tcc:18610806 290.041