Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g01164 ATGTCGAATTTGGGCGGGTCCGGGAGCAAGAAGAGGCGGAGCGAGAGGGTTTATAAGTTTAGGAGGTTTGGCGAGAACGGGTATCCGGCTGAGTTAGTGGGCCGATCGTTTAGAGAGAATGTGAAAGCTCTGGTTGAATATGGACATTTGGAGAGTAAATTATGGAGTGGATTGAGAAGTTGGTCTTTTCAGCTGGAAGTGAATAGACATCCTCCATTTCATGTTCTTCTCTTTGTTGTTGAGGAACCCATTGAAGCTTCCCCCTATCTCCATTGTAAGCCATGCCAATTTGTAGGCTGGGGGCATCATATGATCTGCAACAAGAAGTACCATTTTCTGTTGCCGTCCAAAGACACCTTATTGGCTGCATGCTTTGACAACAACGGAGGAGATAATTGGTGGGGAAAGGTTGCAGATTTAGGCGGCCACATCTTGCATGGCGTCTTCCACTCCAATGGCTTCGGCCATTTGCTCTCCCTCAATGGTCTCGAAGCCGGCTCTGACCTCCCCGGCCATTCTGTAATGGACTTGTGGGATCGTCTCTGTACTGGACTCCGAGCAAGGAAAGTGAGTCTGAAAGACGTTTCGGAGAAGAAAGGGATGGAACTGAGGCTTGTTTATGGAGTTGCAGAGGGGCAGCCATGGTTTCACCGATGGGGCTATTCGTTTAGCAGAGGGACCTTCTGCGTCACGCCGGAAATGTACGAGAAAGCCATTGAAGCCATTAGAACCATCCCACTAACCTTCCTTCTTCCTCATCTCCACTTCGTCTTCTCCAAATACCTAGTACTTTCAGAAAACTCCATAGCCAACCTCGGTGATCTCTTCCACTTCCTCCTCGAACTCAAATCGAGGATTCCATCCCAAAATTCTGCCGATTCTTTTTCAAATCAGATTGGGATTTTGACCGAGAATTCCTGCCGGTGGTCCCCCAAGAGAGTGGAAATGGCAGTCAGAGTGATCGTAGAATCGTTGAAACAGGCCGAATTCCGGTGGGTTTCCCGGCAAGAGGTTAGAGATTCTGCCCGTGTTTACATCGGCGATACTGGTCTGCTTGATTTCGTTTTGAAATCGTTAGGAAATCACGTGGTCGGAAAATATCTTGTTCGCCGGAGCTTAAATCCGGTTACAAAAGTTCTTGAATATTGCTTGCAAGACATTTCGAATCTGTTTCCCAATCAAGAATCTGCAATATTTCTTCAAAATCCAAAAGTAAAAACGCGAACGGATATGATAAATCGAGCTCAGATAACCAATGACATGGTTTGTCTCTACAAAGCCATCTTCTCCGACCAGACAAACACTCCTATTTCTTCAGCTATATCAGTGGCCGCCAGAATAATCCTCGATTCAAAATACCTTACAAAGGATTACGAACACGGGTCCGATGCCGGAAAACGGCATCTCTTCTGCACCGTGAAGCTCAAGGAATCCATCACGCCGCCTCCATACGAGAGTTTCCCGCTGAAAACAGGTTCCACCATTGACGAGCTTAAGCGAGAAGTTGAAAAAACTTTCAGCGAAATATACTACGGACTGAGGACCTTCCAAGCGGAATCAATCGTTAATCTGAACGCAGATGGATCAGACGTAGTATTGAATATGGTGGAATATGGACGAAAACTGGTTTTCGAGGGAAGCGATAGAGAGATAAAGAGAATGGAGGAAGTGTATGAAAATGGCGACATGCAGACGAGGGTGGTGGTTTGCAGGTGTGGAGCTGAGGAAGACGATGGAGAGCGAATGATTTGCTGTGATATTTGCGAAGCGTGGCAGCACAGTCGATGCGTTCATATTCCAGACGATGAAGAAATTCCCACCATTTTTCTCTGCAATCGATGCGAGAGAGAAATCCTGCTCTTGTCTTCTCTCCCATGA 1878 46.75 MSNLGGSGSKKRRSERVYKFRRFGENGYPAELVGRSFRENVKALVEYGHLESKLWSGLRSWSFQLEVNRHPPFHVLLFVVEEPIEASPYLHCKPCQFVGWGHHMICNKKYHFLLPSKDTLLAACFDNNGGDNWWGKVADLGGHILHGVFHSNGFGHLLSLNGLEAGSDLPGHSVMDLWDRLCTGLRARKVSLKDVSEKKGMELRLVYGVAEGQPWFHRWGYSFSRGTFCVTPEMYEKAIEAIRTIPLTFLLPHLHFVFSKYLVLSENSIANLGDLFHFLLELKSRIPSQNSADSFSNQIGILTENSCRWSPKRVEMAVRVIVESLKQAEFRWVSRQEVRDSARVYIGDTGLLDFVLKSLGNHVVGKYLVRRSLNPVTKVLEYCLQDISNLFPNQESAIFLQNPKVKTRTDMINRAQITNDMVCLYKAIFSDQTNTPISSAISVAARIILDSKYLTKDYEHGSDAGKRHLFCTVKLKESITPPPYESFPLKTGSTIDELKREVEKTFSEIYYGLRTFQAESIVNLNADGSDVVLNMVEYGRKLVFEGSDREIKRMEEVYENGDMQTRVVVCRCGAEEDDGERMICCDICEAWQHSRCVHIPDDEEIPTIFLCNRCEREILLLSSLP 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45667404 45669632 - Bda015865.1 Bda10g01164 15052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g01164 625 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 558 622 IPR013083 -
Bda10g01164 625 ProSiteProfiles Zinc finger PHD-type profile. 567 617 IPR019787 -
Bda10g01164 625 SUPERFAMILY FYVE/PHD zinc finger 559 618 IPR011011 -
Bda10g01164 625 SMART PHD_3 569 615 IPR001965 -
Bda10g01164 625 CDD PHD_MMD1_like 570 614 - -
Bda10g01164 625 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 8 625 - -
Bda10g01164 625 Pfam PHD-finger 570 616 IPR019787 -
Bda10g01164 625 ProSitePatterns Zinc finger PHD-type signature. 570 614 IPR019786 -
Bda10g01164 625 PANTHER PHD FINGER PROTEIN MALE STERILITY 1 8 625 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00366 Bda-Chr3:3077521 Bda10g01164 Bda-Chr10:45667404 2.61E-77 dispersed
Bda08g00752 Bda-Chr8:9430169 Bda10g01164 Bda-Chr10:45667404 4.94E-06 dispersed
Bda08g00759 Bda-Chr8:9692566 Bda10g01164 Bda-Chr10:45667404 4.78E-06 dispersed
Bda10g01164 Bda-Chr10:45667404 Bda14g01196 Bda-Chr14:11845892 3.89E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16552 PF00628 PHD 1.10E-08 CL0390 Bda TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g01164 - - qsu:112023686 766.533