Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00397 ATGTCGTTTTCCGCGGCCAAGCTTTCTCATCCCCTCTTTCTCAACGCCTCCACCCCCAGATCCAATGATAAGTCCTTGCAATCTGATTCTTTCCATTTCTGCTCCTCCTTTTTTGGATCCTCCGCCAGGCTTCGCTTCGAGGCTCTCTCCAGGGCCAATCTTCCTGATTCTCGCCGTCGATCCACCGCTGTCGTTGCTGTTTCTGAAGCTGTTAAGGAAAAGAAGCTCAAATCTTCATCCAATCTGCTAATCACGAAAGAAGAGGGCTTGGAGCTCTACGAAGACATGGTCCTGGGCAGAACTTTTGAAGATATGTGTGCTCAGATGTATTACCGAGGGAAAATGTTTGGTTTTGTTCACCTCTACAATGGCCAAGAGGCCGTCTCAACTGGGTTCATCAAGCTTTTGAAGAAGGAAGATTGTGTTGTTAGCACTTATCGTGATCACGTCCATGCAGTCAGCAAAGGTGTCCCATCTCGCGCTGTCATGAGCGAGCTCTTTGGAAAGACCACCGGCTGCTGCCGAGGCCAAGGCGGCTCTATGCACATGTTTTCAAAAGAATTCAATCTGATTGGCGGGTTTGCATTCATTGGGGAAGGAATACCAGTTGCGACTGGAGCTGCCTTCACATCGAAATATAGAAGGGAGGCTTTAAAAGAGACAAATTGTGATGAAGTAACGGTAGCATTCTTTGGTGATGGAACCTGTAATAATGGTCAGTTCTTTGAGTGTTTGAACATGGCTGCGCTGTGGAAACTTCCTATTGTGTTTGTTGTTGAGAATAATCTGTGGGCCATTGGAATGTCACATTTGAGGGCAACTTCAGATCCAGAGATTTGGAAGAAGGGGCCAGCGTTTGGGATGCCTGGTGTCCATGTTGATGGAATGGATGTTTTAAAGGTGAGAGAGGTGGCAAAGGAGGCAATTGGGAGGGCCAGAAGAGGTGAAGGGCCGACTCTTGTGGAATGTGAAACATATAGGTTTAGAGGACACTCATTGGCTGATCCTGATGAACTTCGTGACCCTGCTGAGAAGGCACGCTATGCTGCTAGAGATCCAATCACAGCTTTGAAGAAATACATAATTGAAAACAATTTGGCCAGTGAGAAGGAGCTAAAGGCTATCGATAAGAAGATTGAGGAGGTAGTAGAGGAAGCTGTGGAGTTTGCAGATGAAAGCCCCCATCCACAGCGCAGCCAGTTGCTGGAAAATGTGTTTGCCGATCCAAAAGGATTTGGAATTGGACCTGATGGAAGGTACAGATGTGAAGATCCTAAATTCACTGAAGGCACTGCTCACGTTTAA 1305 46.97 MSFSAAKLSHPLFLNASTPRSNDKSLQSDSFHFCSSFFGSSARLRFEALSRANLPDSRRRSTAVVAVSEAVKEKKLKSSSNLLITKEEGLELYEDMVLGRTFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDCVVSTYRDHVHAVSKGVPSRAVMSELFGKTTGCCRGQGGSMHMFSKEFNLIGGFAFIGEGIPVATGAAFTSKYRREALKETNCDEVTVAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIGRARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYIIENNLASEKELKAIDKKIEEVVEEAVEFADESPHPQRSQLLENVFADPKGFGIGPDGRYRCEDPKFTEGTAHV 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4306450 4308599 + Bda005138.1 Bda11g00397 15505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00397 434 Gene3D - 55 415 - -
Bda11g00397 434 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA 4 434 - -
Bda11g00397 434 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 84 409 IPR029061 -
Bda11g00397 434 Coils Coil 365 392 - -
Bda11g00397 434 Pfam Dehydrogenase E1 component 95 397 IPR001017 GO:0016624
Bda11g00397 434 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 4 434 - -
Bda11g00397 434 TIGRFAM PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 86 407 IPR017597 GO:0004739|GO:0006086|GO:0043231
Bda11g00397 434 CDD TPP_E1_PDC_ADC_BCADC 92 379 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g02180 Bda11g00397 CCT
Bda01g02180 Bda11g00397 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00397 Bda-Chr11:4306450 Bda13g01553 Bda-Chr13:38738969 1.19E-31 dispersed
Bda04g00380 Bda-Chr4:50611795 Bda11g00397 Bda-Chr11:4306450 2.54E-30 transposed
Bda10g01003 Bda-Chr10:44218873 Bda11g00397 Bda-Chr11:4306450 1.11E-74 transposed
Bda13g00911 Bda-Chr13:10839583 Bda11g00397 Bda-Chr11:4306450 4.31E-92 transposed
Bda11g00397 Bda-Chr11:4306450 Bda13g00547 Bda-Chr13:6459533 3.92E-86 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00397 K00161 - zju:107423789 707.212