Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01242 ATGGATCCACCTTCATTGATCGATGAAGAATCGTATCCTAGTCCAAATGTACCGTCTTACAATCTGGCCGAGATCTGGCAGCTCCAGATGAACGGCTATGCGGTTATTGTCGAATCTGGCGTCGGATTGGGCGAGTCGGGGGCTCAGTTCGCCCCCAATGTGGTCCGATTGGAGCAAGTTTCTGCTGTGAATCACGGACATTCGGCCAATGTCAAGGTTCAGGATGGTCCGATGAAGCGACGGGAGCCAGACGGTGATTCTATCAGCCGTCTCCCCTCCGGCAATAGCCCAGCGGCGCAGAATGATAATAAGAAACGGCTTAAAACAGCAGGGAGTAGGGAGATGAACTACTACGAATCAAAAACTGGAGCAGAAGTGCAAAACTCTCAGCCGCCAAAGCAGGATTGCATCCATGTTCGAGCAAGAAGGGGCCAAGCTACTGACAGCCATAGTTTGGCTGAAAGGGCTAGAAGAGAGAAGATAAGTGAGAGGATGAAAATTCTGCAGGATTTGGTCCCAGGTTGCAGCAAGGTCAACGGAAAAGCGATGGTGCTCGATGAGATTATCAACTACGTTCAATCGTTGCAGAGTCAAGTTGAGTTCTTGTCAATGAAGCTTGAAGCAGTCAATTCAAGAGTGAGCCCTGGGATTGAAGTGTTTCCTCCTAAAGATGCAAGTCCAAATTCACTGTGTTTCACTTGCAATTTCCTTTGA 714 48.74 MDPPSLIDEESYPSPNVPSYNLAEIWQLQMNGYAVIVESGVGLGESGAQFAPNVVRLEQVSAVNHGHSANVKVQDGPMKRREPDGDSISRLPSGNSPAAQNDNKKRLKTAGSREMNYYESKTGAEVQNSQPPKQDCIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCSKVNGKAMVLDEIINYVQSLQSQVEFLSMKLEAVNSRVSPGIEVFPPKDASPNSLCFTCNFL 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12947673 12948952 + Bda007753.1 Bda11g01242 16350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01242 237 PANTHER BNAC05G07950D PROTEIN 1 226 - -
Bda11g01242 237 Coils Coil 192 212 - -
Bda11g01242 237 Pfam Helix-loop-helix DNA-binding domain 149 196 IPR011598 GO:0046983
Bda11g01242 237 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 226 IPR024097 GO:0006355
Bda11g01242 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 195 IPR011598 GO:0046983
Bda11g01242 237 MobiDBLite consensus disorder prediction 66 111 - -
Bda11g01242 237 Gene3D - 142 215 IPR036638 GO:0046983
Bda11g01242 237 SMART finulus 151 201 IPR011598 GO:0046983
Bda11g01242 237 CDD bHLH_AtBPE_like 135 220 - -
Bda11g01242 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 212 IPR036638 GO:0046983
Bda11g01242 237 MobiDBLite consensus disorder prediction 89 105 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g02247 Bda11g01242 CCT
Bda01g02247 Bda11g01242 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01242 Bda-Chr11:12947673 Bda15g00591 Bda-Chr15:9105510 5.48E-58 dispersed
Bda01g02276 Bda-Chr1:59116207 Bda11g01242 Bda-Chr11:12947673 3.10E-66 wgd
Bda01g02247 Bda-Chr1:58264061 Bda11g01242 Bda-Chr11:12947673 4.97E-106 wgd
Bda11g01242 Bda-Chr11:12947673 Bda06g00566 Bda-Chr6:7945300 7.77E-45 wgd
Bda11g01242 Bda-Chr11:12947673 Bda07g01581 Bda-Chr7:29316180 1.07E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16680 PF00010 HLH 2.00E-08 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01242 - - csv:101209222 231.106