Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01846 ATGGAATCCGTAGAGTTGGCGTTGAAATCTAGCTTTAGGAAGAAGATGTCTGTGAATTTGAGCCCCCAGCTACGTTGGGATGAATTGGGGTCGTCCGGTGTCCAAAATGTCGTCTCTTGTGATGACTTTTCTGTAGACGAACTCCTCAATTTCTCTAACGAAGATGGATTTGAAGGCAAAGAGAATGGAGAAGAAGAAAACGACGACCATAAGGGCACAGATGATTTGGCAGACCTCGAATGGTTCTCCCATTTCGTTGATGATTCCTTCCCCGAACACTCTGCGCCATTTCCGGCGGGAATTTGGACAGGAAAGCCGAAGCAGAGTGAACTAGAGAGAGAAGCAAAGGCTTTTACTCCCCCGCAGCCTTGTTTCCAAACTCCGATTCCTGCTAAGGCGAGAAGCAAGCGGCCGAGAACCGGAGGTCGGGTTTGGGTTGTCGGATTCTCGTCGTTAACGGAAACTTCCTCAAGCTCAACTACGTCGTCGTCTTCCTCTTCATCACCGTCAAGCCCTTTGCTCAACAACATCATGGTTCCTTTTCCCGACGAGATAGTTTTTCGGTACGCAAAGCCGCCGGCGAAGAAACCGAAGATAAAATCACCAGTCAACGGAAATGGCAGAAGTGGAACCACCCAGACAACTCGCCGGTGCAGCCATTGCGGCGTGCAGAAAACACCACAATGGAGAGCCGGTCCTCTCGGAGCCAAGACACTCTGTAACGCATGCGGTGTGCGATACAAATCGGGTCGACTCCTACCCGAATATAGACCCGCGTGCAGCCCAACATTTTCAAGTGAATTACACTCAAATCACCACCGTAGAGTCCTGGAAATGCGGCGGAAGAAGGAGGATCCAGGACTTCCAGAGCAGGGTTTCACCCCTCCTCCGGTCGTTCCGAGTTTTTGA 909 50.94 MESVELALKSSFRKKMSVNLSPQLRWDELGSSGVQNVVSCDDFSVDELLNFSNEDGFEGKENGEEENDDHKGTDDLADLEWFSHFVDDSFPEHSAPFPAGIWTGKPKQSELEREAKAFTPPQPCFQTPIPAKARSKRPRTGGRVWVVGFSSLTETSSSSTTSSSSSSSPSSPLLNNIMVPFPDEIVFRYAKPPAKKPKIKSPVNGNGRSGTTQTTRRCSHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRRVLEMRRKKEDPGLPEQGFTPPPVVPSF 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 53656847 53657958 - Bda008783.2 Bda11g01846 16954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01846 302 Pfam GATA zinc finger 218 252 IPR000679 GO:0006355|GO:0043565
Bda11g01846 302 PANTHER GATA TRANSCRIPTION FACTOR 73 286 - -
Bda11g01846 302 Gene3D - 208 285 IPR013088 GO:0006355|GO:0008270
Bda11g01846 302 MobiDBLite consensus disorder prediction 154 174 - -
Bda11g01846 302 MobiDBLite consensus disorder prediction 120 139 - -
Bda11g01846 302 PANTHER GATA TRANSCRIPTION FACTOR 1 71 - -
Bda11g01846 302 SMART GATA_3 212 266 IPR000679 GO:0006355|GO:0043565
Bda11g01846 302 ProSitePatterns GATA-type zinc finger domain. 218 243 IPR000679 GO:0006355|GO:0043565
Bda11g01846 302 MobiDBLite consensus disorder prediction 282 302 - -
Bda11g01846 302 CDD ZnF_GATA 217 265 IPR000679 GO:0006355|GO:0043565
Bda11g01846 302 PANTHER GATA TRANSCRIPTION FACTOR 1 71 - -
Bda11g01846 302 PIRSF Txn_fac_GATA_plant 1 73 IPR016679 GO:0003677|GO:0005634|GO:0045893
Bda11g01846 302 PIRSF Txn_fac_GATA_plant 65 292 IPR016679 GO:0003677|GO:0005634|GO:0045893
Bda11g01846 302 MobiDBLite consensus disorder prediction 53 74 - -
Bda11g01846 302 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 214 275 - -
Bda11g01846 302 PANTHER GATA TRANSCRIPTION FACTOR 73 286 - -
Bda11g01846 302 MobiDBLite consensus disorder prediction 195 215 - -
Bda11g01846 302 ProSiteProfiles GATA-type zinc finger domain profile. 212 248 IPR000679 GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda04g00030 Bda11g01846 CCT
Bda04g00030 Bda11g01846 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00953 Bda-Chr8:18365029 Bda11g01846 Bda-Chr11:53656847 1.84E-57 dispersed
Bda08g00959 Bda-Chr8:18763743 Bda11g01846 Bda-Chr11:53656847 9.56E-58 dispersed
Bda11g01846 Bda-Chr11:53656847 Bda10g00830 Bda-Chr10:42690265 1.74E-43 dispersed
Bda11g01846 Bda-Chr11:53656847 Bda14g00992 Bda-Chr14:8132974 8.80E-70 wgd
Bda11g01846 Bda-Chr11:53656847 Bda04g00030 Bda-Chr4:483324 9.83E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16739 PF00320 GATA 1.70E-16 CL0167 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01846 - - qsu:112033603 303.523