Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00351 ATGGATCGGAGGGACCCTTTGGCGTTATCGGGATCGCAATCGTTCTATATGCAGAGAGGAATAATTGGTTCTGTCTCAAATCCTCATTCTGGATTACAAGGGCCTCATGCCCTTCGATCGATAACGAGCCAAACAGCTCATGTTCAGTCCAATGTTGGAGGAAACACCATTGGATCGACAATACAGGTTGAACATTCCCAATCAATTTCCCATCGTACAGTCGATTTCGGTGGACAATCAGTAATGGCATTGGCCGAGCCGATGAAAAGAAAGCGGGGGAGGCCTCGGAAGTATGGACCGGATGGAAATGTCTCGTTGGACATTGCTGCAAAAGTTGTGTCGTTTTCCCAGCAGGGGCCGAGAGCTATATGCATCTTATCGGCCAGTGGTGCTGTTTCCACTGTGACTCTTCGTCAGCCTTCGACTTCCGGTGGCACTGTCACATATGAGGGACGGTTTGAGATTGTATGTTTGTCGGGGTCTTACCTGCTTGACGGCAGCACTGGATCGCGGGGCCAAAACAGCAGCTTAAGTGTCTCCCTTGCCAGTCCGGATGGCCATGTGATTGGTGGGAGAGTTGGTGGAGTTCTTATTGCTGCAACCCCTGTTCAGATGATTCTGGGAAGCTTCATGTGGGGTGGAACGAGAACTAAGAACAAACGAAGGGAAGCTTTAGAAGGCGTGATAGACTCCGACCAACAGACAATGGAGAATTTGACCGGGGCTGCATTGCACAGTGTTGCTCTCAGCCCAGCCTCCTCCCCTATCGAAGTTTGGCCGACTCCTCAGCCGGTGGACTTGCGCAGCTCCCATATTGACATTGACTTGATGAGAGGATAA 840 50.83 MDRRDPLALSGSQSFYMQRGIIGSVSNPHSGLQGPHALRSITSQTAHVQSNVGGNTIGSTIQVEHSQSISHRTVDFGGQSVMALAEPMKRKRGRPRKYGPDGNVSLDIAAKVVSFSQQGPRAICILSASGAVSTVTLRQPSTSGGTVTYEGRFEIVCLSGSYLLDGSTGSRGQNSSLSVSLASPDGHVIGGRVGGVLIAATPVQMILGSFMWGGTRTKNKRREALEGVIDSDQQTMENLTGAALHSVALSPASSPIEVWPTPQPVDLRSSHIDIDLMRG 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4380526 4382250 + Bda001241.2 Bda13g00351 18482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00351 279 CDD DUF296 107 210 IPR005175 -
Bda13g00351 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 107 234 IPR039605 GO:0003680
Bda13g00351 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 42 106 IPR039605 GO:0003680
Bda13g00351 279 Gene3D - 105 231 - -
Bda13g00351 279 Pfam Plants and Prokaryotes Conserved (PCC) domain 107 210 IPR005175 -
Bda13g00351 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 107 234 - -
Bda13g00351 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 42 106 - -
Bda13g00351 279 ProSiteProfiles PPC domain profile profile. 92 232 IPR005175 -
Bda13g00351 279 SUPERFAMILY AF0104/ALDC/Ptd012-like 107 216 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda08g00520 Bda13g00351 CCT
Bda08g00520 Bda13g00351 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g00351 Bda-Chr13:4380526 Bda15g00752 Bda-Chr15:11110255 3.04E-38 dispersed
Bda11g00244 Bda-Chr11:2898066 Bda13g00351 Bda-Chr13:4380526 7.15E-126 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00351 - - qsu:112035696 281.182