Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00420 ATGTCGACTCCTTCCAGAAAGAGATTGATGAGAGATTTCAAGAGGTTACAACAAGATCCTCCTGCTGGAATTAGTGGTGCTCCTCAAGACAATAATATCATGTTTTGGAACGCTGTGATATTTGGACCTGATGACACACCTTGGGATGGAGGTATTGTCAATGCTGTATCGTTACATGTGTTCATGTTCATTATCTTCATTTCATGTACGTTCAAGTTGACACTTCAATTTACAGAGGATTATCCAAACAAGCCCCCAACTGTGCGCTTTGTTTCTCGGATGTTTCATCCAAATATTTACGCTGATGGAAGCATTTGCTTGGACATTCTGCAAAATCAGTGGAGTCCGATATATGATGTTGCTGCTATTCTCACCTCGATACAGACTGCAGTATTGGTTATGCTAGTTTCCTCCTATGTATTTCTTTGTAGACAGCGTGCGCACGGGCAGTATGCCCATCATGGGCGGCCTTTACAATATTATGCTGCAGAAATCTCTGATACACGAACCATTAGGATTTTGCGTGGTGGAATTCTGTGTTTATGTACAGATATTAATTCACTTCTCTGTGATCCAAACCCAAACTCACCTGCAAATTCTGAAGCTGCTCGTATGTTCAGTGAGACCAAACGCGAGTACAACAGAAGAGTACGAGAGATTGTTGAGCAGAGTTGGACTGCTGATTAA 687 41.92 MSTPSRKRLMRDFKRLQQDPPAGISGAPQDNNIMFWNAVIFGPDDTPWDGGIVNAVSLHVFMFIIFISCTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQTAVLVMLVSSYVFLCRQRAHGQYAHHGRPLQYYAAEISDTRTIRILRGGILCLCTDINSLLCDPNPNSPANSEAARMFSETKREYNRRVREIVEQSWTAD 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4731886 4733635 + BLOR00420 Blo01g00420 54860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00420 228 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1 53 - -
Blo01g00420 228 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 69 130 - -
Blo01g00420 228 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 226 IPR000608 -
Blo01g00420 228 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 181 228 - -
Blo01g00420 228 Gene3D Ubiquitin Conjugating Enzyme 166 228 IPR016135 -
Blo01g00420 228 SMART ubc_7 7 226 - -
Blo01g00420 228 Pfam Ubiquitin-conjugating enzyme 8 52 IPR000608 -
Blo01g00420 228 Pfam Ubiquitin-conjugating enzyme 68 129 IPR000608 -
Blo01g00420 228 CDD UBCc 7 221 IPR000608 -
Blo01g00420 228 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 1 53 - -
Blo01g00420 228 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 95 110 IPR023313 -
Blo01g00420 228 Gene3D Ubiquitin Conjugating Enzyme 1 148 IPR016135 -
Blo01g00420 228 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 69 130 - -
Blo01g00420 228 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 181 228 - -
Blo01g00420 228 SUPERFAMILY UBC-like 1 132 IPR016135 -
Blo01g00420 228 SUPERFAMILY UBC-like 178 226 IPR016135 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g00420 Blo16g01129 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00420 Blo-Chr1:4731886 Blo06g01071 Blo-Chr6:34065200 8.90E-31 dispersed
Blo01g00420 Blo-Chr1:4731886 Blo16g01129 Blo-Chr16:39821002 4.56E-92 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00420 K10573 - jre:108989809 222.246