Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01789 ATGGGTACTGGTTGGAAAAGATCCTTCTGCTCCACCACCCGTAGAGACTCGAAATCCAATCTTTCAAAGGAGGAGCAGAGGAGTCATACTCCAAGTCCTAGCCCAACCCCCAGAAGCAGCTTCAAGCTAGGATTCCTCTCCGGCGGCAACGATGCATCCACTCCACGATCGCAGCCTCTGTCAGCCGCTCCGCCTGGCTTGCGCTGCCGAACAGCGGCAGAGGATGGGTTGAGTGCAGATCAACGCGAAACCACGCTGAAGACAAGGAAGAGCGGAAAATTAGTGGATTCGACTCCTAATTCTCCACGCTCTCCTCTAAAGATCTCCCTCTTCAAGAACAGCTTCAAGTTCAGAAGTAGCTGTGGTGTTTGTTTAAACAGCATGAAGAGAGAGAAAGGAACAGCCATGTATACAGCTGATTGTTCCCATACCTTCCATTTTCTCTGCATAGCCACTCACGTCAGAAAGAATGGTAACCTCGTCTGCCCACTCTGCAACACCGCCTGGAAAGACGCTCCATTGCTGTCCGTCCACAAGAACCTCGGCCAAGACGATGCAGAGAAAAATCACTTTGATATGGAATCTAAAAAAGCTACAGAATCATCTCCTAGAGCATTCATAACCTTGAAGGAGCAAGGAAAATCGCCGCAGCTGACTAAGAAACCATTGAATTCCTGGTCCTATGATGAAGACGAGCCAGTCGTATCACCGTTTGGTCGGATTATTCCCATTTCAGACCAGGTGGATGAGACGAGAGACTTCCCGGGATTCTTTGCCAATCCGAATCCTTCGCCTGACTTAAAGTCCGGCGGTGGAAAACAGGCGAAAGAAAGAAATTTGAGAAGCAATGTTCAAGTTAGGATATTACCAGAATCGGCCCTTATATACGCAGGAGATAGCCACGAGACGTATGCTGTGGCGCTTAGCTTGAAGGCAGCCCCGCCACCGTCTTCTCCCACGTACCGCGCTCCGATTGACTTAGTGACAGTACTCGACGTAAGTGAAAGAATGACTGGCGCTAAGCTGGAGATGCTAAAGCGCGCTATGCGCCTGGTCATCTCCTCTCTCATCTCGTCCGACCGCCTTTCTATCGTTGCTTTATCTGGCAGTCCTAAGCGGCTGCTACCTCTGAAGAGAATGACAGTTCAAGGACAGCGTACAGCGTGTCAAGTGATCGACCAACTCGTATGCAGCGACGGTAACTGCGTTGCAGAAGCTACTAAAAAGGCGGCTCTGGTGCTTGAAAATCGACGGGAGAAAAACCCAGTAGCGAGCATCATGCTTTTGTTGGATGGCCAGGATGAGCGGTTCCAAAACCGCAATGATTTTATCGATCAACTTCATTGGAGGAGCCAAGAGAGGTCTATCGGTTTCTCTCATATTGAGATTCCTGTTAATGAATTTGGGCTTGGAGAAGATGGTAACTTCAATCACGAGCTTGCTGAAGTATCTTTTGCTAATTGCATTGGTAGTTTACAAAGTCCGGTTGTGCAAGACCTCAGGATTCAGCTCAATTTCTCCGATTCTTCGTCTGTTGAGATATTGGCTATCTACATGGCAATTGGGTCATCGCCAACTGTCTGCAATTCAGGTTGTCTGCGGCTGGGCGATTTATACGCTGACGAGGAGAGAGAATTACTCGTCGAATTAAGGATGCCTACGTCGGCTGTTGGAAACCAATTCCCTATGTCCGTACGATGTCTTTACAAAGACACTGCAACCCAAGACGTTGTCTTTTACAGAGAAGAAGCTCTTGTCGTACCACATCCCCACGTCGTTCGAATATCACCTTCTAAAACTGATAAATTGAAGAATATGTTTATTACTACCAGGGCGGTGGCTGAATCGAGGAGCCTAAACGACGCCGGCGATTTTTTGAGCGCTTATAATTTACTTGCGTCAGCTCAAGCTTTGCTCACGCAGTCTAACTCCACTCCGGGCGGCGACGAATACGTTCGAACGTTGGAGGTTGAGATGGCAGAGTTACATTGGCAGAGGCAGAATGAGATGGAGGAGCAACATCAGATGTTGATGATGACGATGATGATCGAACAGAGCAGATGCAGCGAGAGAGAAACTACGACAGTTGTTGATGAGAACAAGGACCCTGCTACTCCCAAGTCAACCTGGAGAGCGGTTGATAAGCTGAATAATATGGCCATCGCAAAGCTGTTGAGAATTAGATCAGTAGGAGATTTGCATGGCTTCCAAAATGGAAAGCTTTAG 2226 48.25 MGTGWKRSFCSTTRRDSKSNLSKEEQRSHTPSPSPTPRSSFKLGFLSGGNDASTPRSQPLSAAPPGLRCRTAAEDGLSADQRETTLKTRKSGKLVDSTPNSPRSPLKISLFKNSFKFRSSCGVCLNSMKREKGTAMYTADCSHTFHFLCIATHVRKNGNLVCPLCNTAWKDAPLLSVHKNLGQDDAEKNHFDMESKKATESSPRAFITLKEQGKSPQLTKKPLNSWSYDEDEPVVSPFGRIIPISDQVDETRDFPGFFANPNPSPDLKSGGGKQAKERNLRSNVQVRILPESALIYAGDSHETYAVALSLKAAPPPSSPTYRAPIDLVTVLDVSERMTGAKLEMLKRAMRLVISSLISSDRLSIVALSGSPKRLLPLKRMTVQGQRTACQVIDQLVCSDGNCVAEATKKAALVLENRREKNPVASIMLLLDGQDERFQNRNDFIDQLHWRSQERSIGFSHIEIPVNEFGLGEDGNFNHELAEVSFANCIGSLQSPVVQDLRIQLNFSDSSSVEILAIYMAIGSSPTVCNSGCLRLGDLYADEERELLVELRMPTSAVGNQFPMSVRCLYKDTATQDVVFYREEALVVPHPHVVRISPSKTDKLKNMFITTRAVAESRSLNDAGDFLSAYNLLASAQALLTQSNSTPGGDEYVRTLEVEMAELHWQRQNEMEEQHQMLMMTMMIEQSRCSERETTTVVDENKDPATPKSTWRAVDKLNNMAIAKLLRIRSVGDLHGFQNGKL 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57620563 57622887 - BLOR01789 Blo01g01789 56229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01789 741 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 225 IPR013083 -
Blo01g01789 741 MobiDBLite consensus disorder prediction 258 277 - -
Blo01g01789 741 Gene3D von Willebrand factor, type A domain 326 490 IPR036465 -
Blo01g01789 741 SMART VWA_4 324 501 IPR002035 -
Blo01g01789 741 ProSiteProfiles Zinc finger RING-type profile. 121 166 IPR001841 -
Blo01g01789 741 Coils Coil 652 672 - -
Blo01g01789 741 CDD RING-H2 121 166 - -
Blo01g01789 741 SMART ring_2 121 165 IPR001841 -
Blo01g01789 741 MobiDBLite consensus disorder prediction 11 25 - -
Blo01g01789 741 Pfam Ring finger domain 120 166 IPR001841 -
Blo01g01789 741 Pfam von Willebrand factor type A domain 327 433 IPR002035 -
Blo01g01789 741 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 739 - -
Blo01g01789 741 ProSiteProfiles VWFA domain profile. 326 484 IPR002035 -
Blo01g01789 741 MobiDBLite consensus disorder prediction 26 60 - -
Blo01g01789 741 PANTHER E3 UBIQUITIN-PROTEIN LIGASE WAV3 3 739 - -
Blo01g01789 741 SUPERFAMILY RING/U-box 114 170 - -
Blo01g01789 741 MobiDBLite consensus disorder prediction 75 90 - -
Blo01g01789 741 SUPERFAMILY vWA-like 322 436 IPR036465 -
Blo01g01789 741 MobiDBLite consensus disorder prediction 1 103 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g01789 Blo18g00728 CCT
Blo01g01789 Blo17g00085 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01789 Blo-Chr1:57620563 Blo17g00085 Blo-Chr17:653072 0 dispersed
Blo01g01789 Blo-Chr1:57620563 Blo18g00095 Blo-Chr18:795748 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01789 - - pvy:116137692 727.628