Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01790 ATGCCTCGTCCTACGCTTAACTTGTGTAACACATTTTACAAGGTAGAGAGCCTTGATGTGTCTTCCATAGGGAGAGGCAAAAATGAAAGCTTTGCGTCTTGCATCGGAAACCTGTATCGCTGTAGCTTTTGGGGCCCTGCCAAGTTGTCGCTGTACACTTCCCTAGCAAACAAGACGCTAGGCGCTAGCCGACGAATTGTTGAGAGAGGGAAAACCCCTTGGCTTTCTGGATTGCCCAGCAGGCAGCAAAATTGTAGTAAAACTGCTGGCTGTCAAGTGGACTTAGCAGAGAGGAAGAGAATGATGGAGTTGGACGATTATTACTTTACGGAAGAAGATCAACAGGTGAGTTTAGAAAGACAATCAGAAATGGACGATCTTCTCTGTCGTGGTTGGAGTTTCGATAGCATCGATGAAAACATTGCAAGTTTTCTTCATAACTCCACTTTCACTGAAACAACGTTAATGTCTTCCCCCTTCGAATGCAATCTCACTGATGTCTTCCCCTCATCTAATTCGTTCTTCCCCTTGCAAACCATTGAATATTCGCCACACAGCACCTTGGAGAAAACCCCTTCTGCAGTTCCTCAAGATTTCCCCATGTCCTCCATTGAAGAACACGAAGAAGAACTAGAAATATCTGCAGAACCCAAAAATGGATCAAAGAAGCTGGTGAGACAGCCATCAAAGAATCTAATGGCTGAGAGAAGACGAAGAAAGAGATTGAACGAACGTCTTTCTATGCTAAGATCTATTGTTCCAAAAATAAGCAAGGAAAAATATCGAGACCCATTTCCCTTTTTCCTTATTAAATCCCAGATTATGGACAGAACTGCCATACTCGCAGACGCCATAGATTACACTAAAGAACTTCTGGAAAAAATCAGCAACTTGCAGCAAGAGATTGGACCAGACTCCAACCAGTTAGAGATGAGCGTTTTTAAGAGCGTTGAACCACAAGAGTTTCAAACGAAAAATGCACCAAAGTTTGATGTAGAGAGGAGAAACGACGACACCTGGATAGATATTTTCTATGCCGGAGGCGGAAAATCTGGGCTGTTATTATCCACAGTGCGCGCTCTCGAAGCATCAGGCCTGGAAATTCAGCGCTGTGTTATTAGCTGCTTCAATGACTTCACCATGCAAGCTTCTTGCTCAGAGGTATAA 1167 43.7 MPRPTLNLCNTFYKVESLDVSSIGRGKNESFASCIGNLYRCSFWGPAKLSLYTSLANKTLGASRRIVERGKTPWLSGLPSRQQNCSKTAGCQVDLAERKRMMELDDYYFTEEDQQVSLERQSEMDDLLCRGWSFDSIDENIASFLHNSTFTETTLMSSPFECNLTDVFPSSNSFFPLQTIEYSPHSTLEKTPSAVPQDFPMSSIEEHEEELEISAEPKNGSKKLVRQPSKNLMAERRRRKRLNERLSMLRSIVPKISKEKYRDPFPFFLIKSQIMDRTAILADAIDYTKELLEKISNLQQEIGPDSNQLEMSVFKSVEPQEFQTKNAPKFDVERRNDDTWIDIFYAGGGKSGLLLSTVRALEASGLEIQRCVISCFNDFTMQASCSEV 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57630646 57632189 - BLOR01790 Blo01g01790 56230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01790 388 PANTHER DNA BINDING PROTEIN 188 387 - -
Blo01g01790 388 Coils Coil 281 301 - -
Blo01g01790 388 Pfam Helix-loop-helix DNA-binding domain 232 291 IPR011598 GO:0046983
Blo01g01790 388 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 226 291 IPR011598 GO:0046983
Blo01g01790 388 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 230 306 IPR036638 GO:0046983
Blo01g01790 388 Gene3D - 220 306 IPR036638 GO:0046983
Blo01g01790 388 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 188 387 - -
Blo01g01790 388 SMART finulus 232 297 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g01790 Blo18g00096 CCT
Blo01g01790 Blo17g00087 CCT
Blo01g01790 Blo18g00098 CCT
Blo01g01790 Blo12g00741 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01790 Blo-Chr1:57630646 Blo17g00087 Blo-Chr17:677593 1.13E-47 dispersed
Blo01g01790 Blo-Chr1:57630646 Blo12g00741 Blo-Chr12:25767279 1.24E-88 wgd
Blo01g01790 Blo-Chr1:57630646 Blo18g00096 Blo-Chr18:810869 4.02E-24 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11962 PF00010 HLH 5.90E-06 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01790 - - vra:106764382 221.09