Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00882 ATGGCCTTTTTCTTCACCTATCATCACTGTAATCAAATTTTGTTTATTCTCGCCGTTTTCCTCACCGGACATGGAGCTTCAGGAGCTACCTTCACATTCGTAAACAGGTGCGATTTTACAGTATGGCCGGGAATTCTGGGTAGTCCTAAACTAGATAGTACAGGCTTTGAGCTTCAAAAGGGTAGCTCTCGCTCTTTCCAAGCTCCGAATGGCTGGTCCGGCAGGTTCTGGGGTCGAACCAGCTGCAATTTCGACGCCTCTGGTCGCGGCGCCTGCGCTACCGGAGACTGTGGCTCCGGCGAGGTTGAGTGTAAAGGTACCAGCGCTACTCCTCCGGCGACACTGGCTGAGTTTACACTCGGCTCCCGCTCGCAGGATTTCTACGACGTTAGCCTCGTCGACGGCTATAACCTGCCTATGATAGTCGAAGGAACCGGCCGGTCGGGTCCGTGTGAAACGACGGGTTGCATATCAGACCTGAACCGGCGATGTCCGAAGGAATTGAGAGCAGAAGGTGGCGGCGCATGTAGAAGTGCGTGCGATGCATTTGGGAAGCCGGAGTACTGTTGCAGCGGCGCGTACAATACACCTGCTATTTGTAAACCTTCAATGTATTCGCAGATGTTCAAATCCGCCTGCCCAAAATCATATAGCTACGCTTACGACGACGCCACCAGCACGTTTACCTGCACCGGAGCAGATTATACGATCACATTTTGTCCTTCTTTTCCAAGTCTGAAGTCTGCAAAAGATCCATCGGCGATGGGGGCCGGAGACGCAACCAGCGATGTGACAGGGTCAGAGCCAGGTGCAGTACAGCCGACATCTACAACTGGCATTGCTTGGCTAGCCAATTTGGCTACCGGCCATTCCAGCCGGCGTAACCCTTCGACAGCTTTTCATCTTGCATTGATTTTGGTCGTTTCACTCGTTCTCTCCTTTTTCCCATTAGCCATTTAG 960 52.4 MAFFFTYHHCNQILFILAVFLTGHGASGATFTFVNRCDFTVWPGILGSPKLDSTGFELQKGSSRSFQAPNGWSGRFWGRTSCNFDASGRGACATGDCGSGEVECKGTSATPPATLAEFTLGSRSQDFYDVSLVDGYNLPMIVEGTGRSGPCETTGCISDLNRRCPKELRAEGGGACRSACDAFGKPEYCCSGAYNTPAICKPSMYSQMFKSACPKSYSYAYDDATSTFTCTGADYTITFCPSFPSLKSAKDPSAMGAGDATSDVTGSEPGAVQPTSTTGIAWLANLATGHSSRRNPSTAFHLALILVVSLVLSFFPLAI 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10098299 10099418 - BLOR13794 Blo04g00882 59910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00882 319 Gene3D Thaumatin 29 241 IPR037176 -
Blo04g00882 319 CDD TLP-PA 30 240 - -
Blo04g00882 319 Pfam Thaumatin family 35 241 IPR001938 -
Blo04g00882 319 PRINTS Pathogenesis-related protein signature 30 42 IPR001938 -
Blo04g00882 319 PRINTS Pathogenesis-related protein signature 54 63 IPR001938 -
Blo04g00882 319 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Blo04g00882 319 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Blo04g00882 319 PRINTS Pathogenesis-related protein signature 88 117 IPR001938 -
Blo04g00882 319 PRINTS Pathogenesis-related protein signature 231 240 IPR001938 -
Blo04g00882 319 PANTHER OS03G0233200 PROTEIN 9 258 IPR001938 -
Blo04g00882 319 SUPERFAMILY Osmotin, thaumatin-like protein 29 242 IPR037176 -
Blo04g00882 319 SMART tha2 31 241 IPR001938 -
Blo04g00882 319 ProSiteProfiles Thaumatin family profile. 28 241 IPR001938 -
Blo04g00882 319 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 9 258 - -
Blo04g00882 319 ProSitePatterns Thaumatin family signature. 88 104 IPR017949 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo04g00882 Blo05g00709 CCT
Blo04g00882 Blo05g00709 ECH
Blo04g00882 Blo16g00082 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00882 Blo-Chr4:10098299 Blo12g00882 Blo-Chr12:27019113 9.75E-95 dispersed
Blo18g00192 Blo-Chr18:1864808 Blo04g00882 Blo-Chr4:10098299 1.36E-77 dispersed
Blo15g00372 Blo-Chr15:5196858 Blo04g00882 Blo-Chr4:10098299 1.10E-130 transposed
Blo01g01603 Blo-Chr1:55891279 Blo04g00882 Blo-Chr4:10098299 1.27E-92 wgd
Blo16g00082 Blo-Chr16:2209602 Blo04g00882 Blo-Chr4:10098299 1.73E-172 wgd
Blo18g00776 Blo-Chr18:22182084 Blo04g00882 Blo-Chr4:10098299 8.42E-97 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00882 - - tcc:18610757 449.899