Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo04g00900 ATGCACTCGTCAGCCTTCGGGCTAGCCATGGGTCCAACGCAGGGCTCAATCGTCGTCTCCGGAGAGTCGTCGTCCAGATCGGCGATGATGGTTATAAGTTCGGGAAGCGGAGGAGGAATGAGTTGCCAAGATTGTGGAAATCAAGCGAAGAAAGACTGCGTTTACATGAGGTGTAGAAGTTGCTGCAAGAGCCGAGGGTTTGAGTGCTCCACTCATATTAAAAGCACATGGGTTTCTGCTGCTAAGCGACGAGAACGACTCAGTAACTTGGAAAATCAGAAGAAGCAATTTCATCTTCTTCACCAAGAGATTCCGAAAAGGCAGAGAGAGAATCTGTGTTCTTCTTCACTTGTCTGCACCCCAATTGCGTCAGGGTTTGAAGACGGAATTTTTCCACCCGAAGTAAGTTCTCCAGCTGTTTTCCGTTGCGTTAGAGTGACCCCGTTTGATGAGACAGACGACCATTATGCGTATCAGACGGCTGTAAATATCGGAGGCCATGTGTTCAAGGGAATTCTCTACGATCAAGGCCGTGAACCAAACTACGCCACAGGCGAAAGCTCCTCCGTGGGCGGCAGCTGTGGAACCCAATCACTTGATCTGATAGCCACTGGAACAACTGCAGTTGGGGACAGCGCAGTAGCAATAGCGTCTTCGCCTGCAGCTCCATTAATTGCTCCTTTATATCCAGCTCCTCTTAACAGCTTCATCGCTGGTACGCAATTTTTCCTCCCGCCAAGACCTTAA 747 49.67 MHSSAFGLAMGPTQGSIVVSGESSSRSAMMVISSGSGGGMSCQDCGNQAKKDCVYMRCRSCCKSRGFECSTHIKSTWVSAAKRRERLSNLENQKKQFHLLHQEIPKRQRENLCSSSLVCTPIASGFEDGIFPPEVSSPAVFRCVRVTPFDETDDHYAYQTAVNIGGHVFKGILYDQGREPNYATGESSSVGGSCGTQSLDLIATGTTAVGDSAVAIASSPAAPLIAPLYPAPLNSFIAGTQFFLPPRP 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10559249 10560395 + BLOR13812 Blo04g00900 59928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo04g00900 248 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 41 83 IPR006510 -
Blo04g00900 248 Pfam Domain of unknown function (DUF702) 39 179 - -
Blo04g00900 248 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 131 177 IPR006511 -
Blo04g00900 248 PANTHER PROTEIN SHORT INTERNODES 8 244 - -
Blo04g00900 248 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 8 244 IPR007818 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo04g00900 Blo06g00331 CCT
Blo04g00900 Blo05g00815 CCT
Blo04g00900 Blo06g00331 ECH
Blo04g00900 Blo05g00815 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00900 Blo-Chr4:10559249 Blo06g00331 Blo-Chr6:19623522 2.44E-80 dispersed
Blo01g01581 Blo-Chr1:55617084 Blo04g00900 Blo-Chr4:10559249 2.31E-73 wgd
Blo18g00791 Blo-Chr18:22983635 Blo04g00900 Blo-Chr4:10559249 6.97E-70 wgd
Blo04g00900 Blo-Chr4:10559249 Blo05g00815 Blo-Chr5:29760986 6.63E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12318 PF05142 DUF702 5.90E-60 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo04g00900 - - jre:108992063 269.626