Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo05g00815 ATGGCTGGGTTTTTCTCTTTAGGCGGAGGGAGAGGATCGGCAAATAACCAGAATCGGCGGGATCAAGAACAAACTAACCCTCCAAACGAAATTAATCCAGAGAGTTTATTTTGGTACAAGAACAGCGAAGATGTACCATCTTCCAAAAGCTTCGAGCTATGGCAGAATCAAAATCTCTACTCATCTGGAGCGGGTCCTAGCCGGGGCGGCCTGAACATCTCCGATGAGTCACCGGCTAGATCGTCTTTCATGATGACGATGTCGACCGGCGTAGGTACGATGAGTTGCCAAGATTGTGGGAATCAGGCCAAAAAGGATTGCGTTCATATGCGATGTAGAACTTGCTGTAAGAGCCGAGGGTTCGACTGCCATACGCACGTTAGAAGCACTTGGGTTCCGGCTTCAAAGCGCCGGGAGCGGCAGGCTCAGATCGCTGTTGATGTGCAGAATCATGGCCGGGGAGAGATTACAAAACGGCTCAGAGAGCACCCATCGTCTTCCTCCTCGCTGGCCTGCACACGTATTCCGGCTAAATCCTCAGGGTTCGCAGAGGCGGCAGCTTTTCCGGCGGAAGTGAACTCGTCGGCGGTTTTTCGGTGCGTTCGAGTGAGCTCAATGGAAGATCCGGACGACCAGTATGCGTACCAGACGGCTGTGAACATCGGCGGCCATGTTTTCAAGGGAATTCTCTACGATCAAGGGCCTGACATCGTAAACTACATTCCCGGAGAGAGTTCTTCCGGCGCCGGGAGTGGACTCCAACGGCTTAACTTCATCCCTGCCGGAGCTACAACCGCGGCATCTGTAACCAACACGAGTGGAGTTGCTGCTTCTTTATTTGATCCTTCCTTATACCCTACTCCTCTCAATAGCTACATTTCCGGTACTCAATTCTTCTTTCCACCAAGATCTTGA 915 51.8 MAGFFSLGGGRGSANNQNRRDQEQTNPPNEINPESLFWYKNSEDVPSSKSFELWQNQNLYSSGAGPSRGGLNISDESPARSSFMMTMSTGVGTMSCQDCGNQAKKDCVHMRCRTCCKSRGFDCHTHVRSTWVPASKRRERQAQIAVDVQNHGRGEITKRLREHPSSSSSLACTRIPAKSSGFAEAAAFPAEVNSSAVFRCVRVSSMEDPDDQYAYQTAVNIGGHVFKGILYDQGPDIVNYIPGESSSGAGSGLQRLNFIPAGATTAASVTNTSGVAASLFDPSLYPTPLNSYISGTQFFFPPRS 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29760986 29762295 - BLOR15777 Blo05g00815 61249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo05g00815 304 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 95 137 IPR006510 -
Blo05g00815 304 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 187 235 IPR006511 -
Blo05g00815 304 MobiDBLite consensus disorder prediction 10 34 - -
Blo05g00815 304 Pfam Domain of unknown function (DUF702) 93 236 - -
Blo05g00815 304 PANTHER PROTEIN SHORT INTERNODES 1 300 - -
Blo05g00815 304 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 300 IPR007818 GO:0003700|GO:0006355
Blo05g00815 304 MobiDBLite consensus disorder prediction 1 34 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo04g00900 Blo05g00815 CCT
Blo04g00900 Blo05g00815 ECH
Blo05g00815 Blo06g00331 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00815 Blo-Chr5:29760986 Blo18g00791 Blo-Chr18:22983635 4.57E-89 dispersed
Blo01g01581 Blo-Chr1:55617084 Blo05g00815 Blo-Chr5:29760986 1.47E-80 wgd
Blo04g00529 Blo-Chr4:4553860 Blo05g00815 Blo-Chr5:29760986 3.83E-31 wgd
Blo04g00900 Blo-Chr4:10559249 Blo05g00815 Blo-Chr5:29760986 6.63E-72 wgd
Blo05g00815 Blo-Chr5:29760986 Blo06g00331 Blo-Chr6:19623522 1.65E-170 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12432 PF05142 DUF702 4.50E-62 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo05g00815 - - jre:108992063 346.28