Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00871 ATGGCGGAGGAGAGCGTTATCGGGTGTTCGACTGATTTGCCATTGAAGAGGCCGAGGGAAGAGAGTGAGAATGGGTTTTCAGCTCCAACTGTGGCTATGGCGGCGGAGGGGATTGAAGAGCCCGATTGTATTTCCTCTGTTATTCCTGGGTGGTTCTCGGAGGTCAGCCCAATGTGGCCTGGGGAGGCGCATTCCTTGAAGGTTGAGAAGATTTTATTTCAAGGGAAGTCGGATTATCAAAATGTCATGGTTTTTCAGTCATCGACTTATGGAAAGGTTCTTGTGTTGGACGGGGTGATTCAACTAACAGAGAGAGATGAATGTGCTTACCAAGAAATGATCACCCATCTTCCACTTTGCTCAATCCCAAACCCAAGAAAGGTTTTGGTTATTGGCGGTGGAGATGGTGGAGTCTTACGGGAAGTGTCTCGCCATTCATCTGTTGAACAAATTGACATATGTGAAATTGACAAGATGGTCATTGACGTCTCCAAAAAGTTTTTCCCAGATGTAGCGGTCGGGTATGAAGATCCCAGAGTGAAACTTTTTGTAGGCGACGGAGTTGCATATTTGAAGGCTGCTCCCGAAGGGACTTATGATGCAATTATAGTCGATTCTTCGGATCCAATAGGACCTGCACAAGAGCTTTTTGAGAAGCCCTTTTTTGAGTCGGTGGCAAAGGCTCTTCGGCCGGGAGGTGTTGTGTGTACTCAGGCAGAAAGTATATGGCTTCATATGCACATTATTGAAGACATCGTCGCAAACTGCCGCCAAATATTCAAAGGCTCAGTTAACTATGCATGGACTACTGTTCCTACTTATCCTAGCGGGGTGGTCGGTTTTATGCTTTGCTCCACAGAAGGACCCGCAGTCGATTTCAAGCACCCTGTGAGCTCAATCGACACGGATGATAGTTTCAACAAATCAAAAGGACCCTTGAAATTTTACAACCCCGAGATTCACTCGGCAGCTTTCTGTCTGCCAGCATTTGCGAAGAAAGTCATTGATTCGAAAGCAAAATGA 1023 46.33 MAEESVIGCSTDLPLKRPREESENGFSAPTVAMAAEGIEEPDCISSVIPGWFSEVSPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPRKVLVIGGGDGGVLREVSRHSSVEQIDICEIDKMVIDVSKKFFPDVAVGYEDPRVKLFVGDGVAYLKAAPEGTYDAIIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVVGFMLCSTEGPAVDFKHPVSSIDTDDSFNKSKGPLKFYNPEIHSAAFCLPAFAKKVIDSKAK 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32025650 32028341 - BLOR17454 Blo06g00871 62164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00871 340 Pfam Spermine/spermidine synthase domain 107 294 - -
Blo06g00871 340 Hamap Polyamine aminopropyltransferase [speE]. 50 336 IPR001045 GO:0003824
Blo06g00871 340 MobiDBLite consensus disorder prediction 1 25 - -
Blo06g00871 340 PIRSF Spermidine_synth 39 340 IPR030668 GO:0006595
Blo06g00871 340 CDD AdoMet_MTases 127 238 - -
Blo06g00871 340 Gene3D Spermidine synthase, tetramerisation domain 42 101 IPR037163 -
Blo06g00871 340 Pfam Spermidine synthase tetramerisation domain 50 104 IPR035246 -
Blo06g00871 340 PANTHER SPERMIDINE/SPERMINE SYNTHASE 6 340 IPR001045 GO:0003824
Blo06g00871 340 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 128 141 IPR030373 -
Blo06g00871 340 Gene3D Vaccinia Virus protein VP39 102 340 IPR029063 -
Blo06g00871 340 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 49 286 IPR030374 -
Blo06g00871 340 TIGRFAM speE: spermidine synthase 51 330 IPR001045 GO:0003824
Blo06g00871 340 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 47 336 IPR029063 -
Blo06g00871 340 PANTHER SPERMIDINE/SPERMINE SYNTHASE-RELATED 6 340 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g00399 Blo06g00871 CCT
Blo01g00399 Blo06g00871 ECH
Blo06g00871 Blo11g00905 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00871 Blo-Chr6:32025650 Blo01g00399 Blo-Chr1:4520270 0 dispersed
Blo15g00090 Blo-Chr15:751268 Blo06g00871 Blo-Chr6:32025650 2.80E-138 transposed
Blo16g00968 Blo-Chr16:37950902 Blo06g00871 Blo-Chr6:32025650 2.24E-31 transposed
Blo18g00262 Blo-Chr18:2786909 Blo06g00871 Blo-Chr6:32025650 1.60E-32 transposed
Blo11g00905 Blo-Chr11:18562131 Blo06g00871 Blo-Chr6:32025650 1.45E-83 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00871 K00797 - jre:108987113 596.275