Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00474 ATGCTCACAAAGGATCAGACGGCACCTGCAACAAGCGTGGCTGAAAAATTAAGTGGTTATGAAAGAGTACCTGCCAATGATGAGACAAGCTTGCAAGCTGGTGTGTCTCACCAACCCGTCTCTGCGCCCATTGATGCTGGTGGTTATGATATTCAGTTCTATTCAAAAGATGGAGCTGTTGGGAAGACGTGTATGCTTATCTCTTATACTAGCAATACTTTCCCGACGGATTATGTGCCGACTGTGTTTGACAATTTCAGCGCTAATGTGGTGGTAGATGGCAGTACTGTGAACCTTGGATTATGGGACACTGCTGGGCAGGAAGATTACAACAGGCTGAGGCCTCTTAGTTACAGAGGTGCAGATGTGTTCTTATTGGCATTCTCTCTAATCAGCAAAGCCAGCTACGAAAATATCTCTAAGAAGTGGATTCCTGAGCTGAGGCATTATGCCCCGACAATTCCAATTATACTGGTTGGAACAAAACTTGATTTAAGGGATGACAAGACATATTTGATCAATCATCCGGGTGCTACACCAATCACAACTGCTCAGAAGTTTAATGGTGTTTATGTTATGGGTCGTATGGATAACGTTCTTCAATTATTTGCTATTTTGCAGGGTGAAGAACTGAAGAGGGCCATTGGTGCAGCTTCATACATAGAATGCAGCTCCAAAACCCAACAGAATGTCAAGGCCGTTTTTGATGCGGCTATTAAGGTTGTTTTGCAGCCTCCTAAATTGAAGAAAAAGAGAAGGAAGACTAGGCAGTGTGCGTTTCTCTAA 786 43.51 MLTKDQTAPATSVAEKLSGYERVPANDETSLQAGVSHQPVSAPIDAGGYDIQFYSKDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTIPIILVGTKLDLRDDKTYLINHPGATPITTAQKFNGVYVMGRMDNVLQLFAILQGEELKRAIGAASYIECSSKTQQNVKAVFDAAIKVVLQPPKLKKKRRKTRQCAFL 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7686524 7690807 - BLOR06868 Blo15g00474 70874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00474 261 Gene3D - 57 258 IPR027417 -
Blo15g00474 261 Pfam Ras family 57 243 IPR001806 GO:0003924|GO:0005525
Blo15g00474 261 CDD Rop_like 57 243 - -
Blo15g00474 261 SMART rho_sub_3 57 245 IPR001806 GO:0003924|GO:0005525
Blo15g00474 261 SMART ras_sub_4 57 245 - -
Blo15g00474 261 ProSiteProfiles small GTPase Rab1 family profile. 41 261 - -
Blo15g00474 261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 243 IPR027417 -
Blo15g00474 261 PANTHER RHO FAMILY GTPASE 56 261 IPR003578 GO:0005525|GO:0007264
Blo15g00474 261 PANTHER RAC-LIKE GTP-BINDING PROTEIN 7 56 261 - -
Blo15g00474 261 ProSiteProfiles small GTPase Ras family profile. 42 261 IPR001806 GO:0003924|GO:0005525
Blo15g00474 261 TIGRFAM small_GTP: small GTP-binding protein domain 58 168 IPR005225 GO:0005525
Blo15g00474 261 MobiDBLite consensus disorder prediction 1 21 - -
Blo15g00474 261 PRINTS Transforming protein P21 ras signature 50 71 - -
Blo15g00474 261 PRINTS Transforming protein P21 ras signature 73 89 - -
Blo15g00474 261 PRINTS Transforming protein P21 ras signature 152 165 - -
Blo15g00474 261 PRINTS Transforming protein P21 ras signature 90 112 - -
Blo15g00474 261 PRINTS Transforming protein P21 ras signature 220 242 - -
Blo15g00474 261 SMART rab_sub_5 57 245 - -
Blo15g00474 261 ProSiteProfiles small GTPase Rho family profile. 42 242 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo13g00497 Blo15g00474 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00876 Blo-Chr4:9826122 Blo15g00474 Blo-Chr15:7686524 2.14E-87 dispersed
Blo15g00474 Blo-Chr15:7686524 Blo18g00771 Blo-Chr18:21755109 1.31E-83 dispersed
Blo15g00474 Blo-Chr15:7686524 Blo16g00089 Blo-Chr16:2258854 1.61E-103 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00474 K04392 - qsu:112040065 315.849