Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00063 ATGATGGGCTTCCTTCGATTGTACTCTACAATTCATGCTTTTAGCTTTGGCTTTACTTTTGGGTTTATTTTGGCTGCGAAGATAGAAAGCGAACGAAGGTGGTGGAGATGGAGGAACGCGATCTTCGGAAGGGAAAGACCCGTAATATTAGTCAAAAAGGAATGGGGCCATTTCTTACCCAAAAGGAAAAGTAAAGACGACACTCATGCAAAGCTGGGCGAAGTGAAAATGGAATGCGTAGAGTTGGCGTTGAAATCTAGCTTTAGGAAGAAGATGTCTATGAACTTGAGCCCTCAGCTACGTTGGGATGATTTGGGGTCGTTCAGTGTCCAAAATGTCGTTTCCTGTGATGAATTTTCTGTAGACGAACTCCTCAATTTCTCTAACGAAGATGGATCTGAAGGGCAAGAGAATGGAGAAGAAGAAGGAGAAGGAGAAAAAAACGAAGACCATGAGGGCTTTGCTTGTGTCTCTGTTTCTCCACAGGAACCGGAAGACTACGAAAACCCAAATGAAAGTTTTTCTGTTCCAGACGGATTTGGGTCTCTGCCCACGAGTGAGCTCAGTGTTCCGACGGATGATTTGGCAGACCTCGAATGGTTGTCCAATTTCGTTGATGATTCTTTCTCCGAACACTCTGCGCCATTTCCGGCTGGAATTTGGACAGGAAAGCCGAAGCAGAGTGAACTAGAGAGAGAGACGAAGGATTTTACTCCCTCGCAGCATTGTTTCAAAACTCCGATTCCGGCGAAGGCGAGAAGCAAGCGGTCGAGAACCGGAGGCCGGGTCTGGGTTCTCGGATCCTCGTCGTTAACGGAATCTTCCGCAAGCTCAACTACGTCATCGTCTTCCTCTTCATCACCCTCAAGCCCTTTGCTTTTATACAACACCGTGGTTCCTCTCCCCGACGAGACAGTTTTTCGGTACGAAAAGCCGCCGGCGAAGAAACCGAAGAAAAGGTCACCAGTCAACGGAAATGTCGGAAGTGGTACCATGCAGACAACTCGCCGGTGCAGCCATTGCGGCGTTCTGAAAACACCACAATGGAGAGCCGGTCCACTCGGAGCAAAGACACTCTGCAACGCATGTGGCGTTCGATACAAGTCGGGTCGACTCCTACCCGAATACAGACCGGCGTGCAGCCCAACATTTTCAGGCGAACTACACTCAAATCACCACCGCAAAGTCCTGGAAATGCGGCGGAAGAAGGACGACCCAGGACTTCCAGAGCCGGGCTTAACCCCTCCTCCGGTTGTTCCCAGTTTTTAA 1269 49.33 MMGFLRLYSTIHAFSFGFTFGFILAAKIESERRWWRWRNAIFGRERPVILVKKEWGHFLPKRKSKDDTHAKLGEVKMECVELALKSSFRKKMSMNLSPQLRWDDLGSFSVQNVVSCDEFSVDELLNFSNEDGSEGQENGEEEGEGEKNEDHEGFACVSVSPQEPEDYENPNESFSVPDGFGSLPTSELSVPTDDLADLEWLSNFVDDSFSEHSAPFPAGIWTGKPKQSELERETKDFTPSQHCFKTPIPAKARSKRSRTGGRVWVLGSSSLTESSASSTTSSSSSSSPSSPLLLYNTVVPLPDETVFRYEKPPAKKPKKRSPVNGNVGSGTMQTTRRCSHCGVLKTPQWRAGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSGELHSNHHRKVLEMRRKKDDPGLPEPGLTPPPVVPSF 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1975158 1977009 + BLOR07311 Blo16g00063 71254

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00063 422 MobiDBLite consensus disorder prediction 400 422 - -
Blo16g00063 422 MobiDBLite consensus disorder prediction 310 334 - -
Blo16g00063 422 PANTHER GATA TRANSCRIPTION FACTOR 77 407 - -
Blo16g00063 422 MobiDBLite consensus disorder prediction 164 188 - -
Blo16g00063 422 Gene3D - 329 404 IPR013088 GO:0006355|GO:0008270
Blo16g00063 422 PANTHER GATA TRANSCRIPTION FACTOR 77 407 - -
Blo16g00063 422 MobiDBLite consensus disorder prediction 127 188 - -
Blo16g00063 422 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 332 393 - -
Blo16g00063 422 CDD ZnF_GATA 337 386 IPR000679 GO:0006355|GO:0043565
Blo16g00063 422 Pfam GATA zinc finger 338 372 IPR000679 GO:0006355|GO:0043565
Blo16g00063 422 ProSiteProfiles GATA-type zinc finger domain profile. 332 368 IPR000679 GO:0006355|GO:0043565
Blo16g00063 422 SMART GATA_3 332 386 IPR000679 GO:0006355|GO:0043565
Blo16g00063 422 ProSitePatterns GATA-type zinc finger domain. 338 363 IPR000679 GO:0006355|GO:0043565
Blo16g00063 422 MobiDBLite consensus disorder prediction 216 259 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00063 - - - zju:107410110 326.635
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00899 Blo16g00063 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00130 Blo-Chr12:9079273 Blo16g00063 Blo-Chr16:1975158 2.27E-36 dispersed
Blo13g00925 Blo-Chr13:31728275 Blo16g00063 Blo-Chr16:1975158 2.16E-36 dispersed
Blo16g00063 Blo-Chr16:1975158 Blo05g00081 Blo-Chr5:801274 2.69E-46 dispersed
Blo02g00646 Blo-Chr2:15245325 Blo16g00063 Blo-Chr16:1975158 1.15E-62 transposed
Blo16g00063 Blo-Chr16:1975158 Blo04g00899 Blo-Chr4:10469409 1.46E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1071 Blo04g00899 Blo16g00063 Bda04g00030 . . Bpe13g00427 . . . . Cma03g00704 . Car03g00646 . Sed07g1682 . Cpe10g00648 Bhi03g00894 Tan03g2048 Cmetu04g1399 . Hepe04g1570 . . Cla01g01957 Cam01g2046 Cec04g1704 Cco04g1769 Clacu01g2068 Cmu01g1945 Cre04g1619 . . . . Lsi01g00626 . Chy07g01272 Cme08g00904 . . Bda11g01846 . . Bpe06g00027 Bma03g00976 . . Cmo03g00730 . . Cma20g00811 . . . . Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa06g03299 Chy02g00597 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo12g00130 . 1 118 C2C2-Gata Transcription Factor Family AT3G24050 59.7 1.5e-37 153.7
Blo01g01777 . 78 328 C2C2-Gata Transcription Factor Family AT5G25830 51.4 4.4e-65 245.4
Blo16g00063 BCT 81 422 C2C2-Gata Transcription Factor Family AT5G66320 50.6 7.7e-73 271.2
Blo19g00240 . 20 358 C2C2-Gata Transcription Factor Family AT4G17570 55.7 2.3e-89 326.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008902 3 0 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 2 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13365 PF00320 GATA 2.20E-16 CL0167 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo16g00063 Blo_Chr16 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.710562