Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo16g00082 ATGGGGGAAGAGAGATTGACTGGTGTGGTACAGTGGTTCAATGACTCCAAGGGATTCGGCTTCATCAAGCCCGATGGGGATGGCCCGGATCTGTTTGTTCATCAATCGTCGATCCAATCCGATGGTTACCGACGTCTTGTCGAGGGCGAGCAAGTTGAGTTCCAGATCGCTCCTGGCGATGATGGAAAATCTAAAGCCGTTGATGTTATCTGTATTGATGGATCTTCGTTCCAAGGGAACAGGAGGGATGGTTCGGGTGGTGGAAGAGGTGGTCGTGGCGGTGGGTATGGTTTTGGCGGTGGTTGGAGAGGTGACCGCCGAAACGGCGGGGGTGCTGGCTGCTATAGTTGCGGTGATCCAGGGCATTTGGCTAGGGATTGCGGTCGTGCTAATAACCGTGGTGGAGTAGGCGGTGGGTGCTATTCTTGTGGCGAGGGTGGTCACTTGGCGAGAGATTGCCCTCAAGGCAACGGTGGGAGTGGTGGAGGAGGTGGTGGTGGTGGGGCGGGTTCTTGCTACAATTGTGGTGGCTTTGGACACATGGCGAGGGATTGCAATAAGGGAAGCGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGAGCTTGCTTTAAGTGTGGGGAATACGGACACTTGGCTAGGGATTGCGCCGGTGGAAGCAGCAATTTTGGCAGAGGAGCTTCAGGAGCGACGTTCACATTTGTCAACAACTGCGATTTTACAGTATGGCCGGGAACTCTAGGTAGCCCGAAACTAGATAGTACAGGCTTTGAGCTAGAAAAGGGTGGCTCCCGCTCTTTCCAAGCTCCGACAGGCTGGTCCGGCCGATTCTGGGGTCGAACCAGCTGCAACTTCGACGCGTCAGGCCGTGGCGTCTGCGCCACAGGAGACTGCGGATCCGGCGAGGTCGAGTGCAATGGTGCCAGCGCTACTCCTCCGGCGACGCTGGCTGAGTTTACACTCGGCTCCGGCTCGCAGGATTTCTACGACGTTAGCCTTGTTGACGGATATAACCTACCGATGATCGTCGAAGGAACGGGCGGGGCGGGTCCGTGCGAAACCACGGGTTGCGTATCGGACCTCAACCAGCATTGCCCGACGGAATTGAGAGCGGAAGGCGGTGGTGCATGTAGAAGTGCGTGCGAAGCATTTGGGACGGCGGAATACTGTTGCAGCGGCGCTTATAATTCTCCGGCCATTTGTAAACCTTCAATGTACTCGCAGATGTTCAAATCTGCCTGCCCAAAATCATATAGCTACGCTTACGACGACGCCACCAGCACATTCACCTGCACCGGAGCAGATTATACGATCACATTTTGCCCTTCTCCTCCAAGTCTGAAGTCTGCAAGGGATTCATCGGCGACGATGGCCGGAGATGGCACGGAATCAGTGCCTGGTGCGGCAGAGCAGACATCTTCTCCTAACATTGCTTTGCTTGCCAATTTGGCTACCGGTGACTCCAGCCGGACCGACCCTTCAACAGCTTTTCATTCTGCATTGATTTTCGCCGTTTCTCTCAGTCTCTTCTTCTTCCATTCTCAGACTGTGATATTGACTTAG 1560 55.13 MGEERLTGVVQWFNDSKGFGFIKPDGDGPDLFVHQSSIQSDGYRRLVEGEQVEFQIAPGDDGKSKAVDVICIDGSSFQGNRRDGSGGGRGGRGGGYGFGGGWRGDRRNGGGAGCYSCGDPGHLARDCGRANNRGGVGGGCYSCGEGGHLARDCPQGNGGSGGGGGGGGAGSCYNCGGFGHMARDCNKGSGGGGGGGGGGGACFKCGEYGHLARDCAGGSSNFGRGASGATFTFVNNCDFTVWPGTLGSPKLDSTGFELEKGGSRSFQAPTGWSGRFWGRTSCNFDASGRGVCATGDCGSGEVECNGASATPPATLAEFTLGSGSQDFYDVSLVDGYNLPMIVEGTGGAGPCETTGCVSDLNQHCPTELRAEGGGACRSACEAFGTAEYCCSGAYNSPAICKPSMYSQMFKSACPKSYSYAYDDATSTFTCTGADYTITFCPSPPSLKSARDSSATMAGDGTESVPGAAEQTSSPNIALLANLATGDSSRTDPSTAFHSALIFAVSLSLFFFHSQTVILT 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2209602 2215792 + BLOR07330 Blo16g00082 71273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo16g00082 519 SMART tha2 231 441 IPR001938 -
Blo16g00082 519 PANTHER OS03G0233200 PROTEIN 222 458 IPR001938 -
Blo16g00082 519 SUPERFAMILY Retrovirus zinc finger-like domains 163 217 IPR036875 GO:0003676|GO:0008270
Blo16g00082 519 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Blo16g00082 519 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Blo16g00082 519 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Blo16g00082 519 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Blo16g00082 519 SUPERFAMILY Nucleic acid-binding proteins 4 72 IPR012340 -
Blo16g00082 519 Gene3D - 112 162 - -
Blo16g00082 519 Gene3D - 168 224 - -
Blo16g00082 519 ProSiteProfiles Zinc finger CCHC-type profile. 202 215 IPR001878 GO:0003676|GO:0008270
Blo16g00082 519 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 222 458 - -
Blo16g00082 519 Pfam Zinc knuckle 201 215 IPR001878 GO:0003676|GO:0008270
Blo16g00082 519 Pfam Zinc knuckle 171 186 IPR001878 GO:0003676|GO:0008270
Blo16g00082 519 Pfam Zinc knuckle 113 127 IPR001878 GO:0003676|GO:0008270
Blo16g00082 519 Pfam Zinc knuckle 139 155 IPR001878 GO:0003676|GO:0008270
Blo16g00082 519 Pfam Thaumatin family 235 441 IPR001938 -
Blo16g00082 519 ProSiteProfiles Thaumatin family profile. 228 441 IPR001938 -
Blo16g00082 519 ProSiteProfiles Zinc finger CCHC-type profile. 172 185 IPR001878 GO:0003676|GO:0008270
Blo16g00082 519 SUPERFAMILY Osmotin, thaumatin-like protein 229 442 IPR037176 -
Blo16g00082 519 MobiDBLite consensus disorder prediction 450 471 - -
Blo16g00082 519 ProSiteProfiles Zinc finger CCHC-type profile. 140 155 IPR001878 GO:0003676|GO:0008270
Blo16g00082 519 PRINTS Pathogenesis-related protein signature 288 317 IPR001938 -
Blo16g00082 519 PRINTS Pathogenesis-related protein signature 275 286 IPR001938 -
Blo16g00082 519 PRINTS Pathogenesis-related protein signature 431 440 IPR001938 -
Blo16g00082 519 PRINTS Pathogenesis-related protein signature 326 342 IPR001938 -
Blo16g00082 519 PRINTS Pathogenesis-related protein signature 254 263 IPR001938 -
Blo16g00082 519 PRINTS Pathogenesis-related protein signature 230 242 IPR001938 -
Blo16g00082 519 SMART csp_8 7 72 IPR011129 GO:0003676
Blo16g00082 519 ProSitePatterns Thaumatin family signature. 288 304 IPR017949 -
Blo16g00082 519 SUPERFAMILY Retrovirus zinc finger-like domains 106 156 IPR036875 GO:0003676|GO:0008270
Blo16g00082 519 ProSiteProfiles Zinc finger CCHC-type profile. 114 127 IPR001878 GO:0003676|GO:0008270
Blo16g00082 519 Gene3D Thaumatin 229 441 IPR037176 -
Blo16g00082 519 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Blo16g00082 519 CDD CSP_CDS 7 69 IPR002059 GO:0003676
Blo16g00082 519 Gene3D - 2 69 IPR012340 -
Blo16g00082 519 CDD TLP-PA 230 440 - -
Blo16g00082 519 Pfam 'Cold-shock' DNA-binding domain 7 70 IPR002059 GO:0003676
Blo16g00082 519 SMART c2hcfinal6 139 155 IPR001878 GO:0003676|GO:0008270
Blo16g00082 519 SMART c2hcfinal6 201 217 IPR001878 GO:0003676|GO:0008270
Blo16g00082 519 SMART c2hcfinal6 171 187 IPR001878 GO:0003676|GO:0008270
Blo16g00082 519 SMART c2hcfinal6 113 129 IPR001878 GO:0003676|GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo05g00709 Blo16g00082 CCT
Blo05g00709 Blo16g00082 ECH
Blo04g00882 Blo16g00082 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00561 Blo-Chr4:4837151 Blo16g00082 Blo-Chr16:2209602 2.01E-30 dispersed
Blo04g00883 Blo-Chr4:10115411 Blo16g00082 Blo-Chr16:2209602 1.33E-63 dispersed
Blo12g00882 Blo-Chr12:27019113 Blo16g00082 Blo-Chr16:2209602 4.90E-92 dispersed
Blo13g00516 Blo-Chr13:26688647 Blo16g00082 Blo-Chr16:2209602 1.65E-32 dispersed
Blo15g00372 Blo-Chr15:5196858 Blo16g00082 Blo-Chr16:2209602 6.88E-121 dispersed
Blo16g00082 Blo-Chr16:2209602 Blo17g00815 Blo-Chr17:26326885 2.58E-76 dispersed
Blo17g00184 Blo-Chr17:1870138 Blo16g00082 Blo-Chr16:2209602 1.03E-21 dispersed
Blo08g00069 Blo-Chr8:674114 Blo16g00082 Blo-Chr16:2209602 2.35E-11 transposed
Blo01g01603 Blo-Chr1:55891279 Blo16g00082 Blo-Chr16:2209602 3.43E-95 wgd
Blo16g00082 Blo-Chr16:2209602 Blo18g00776 Blo-Chr18:22182084 3.05E-90 wgd
Blo16g00082 Blo-Chr16:2209602 Blo04g00882 Blo-Chr4:10098299 1.73E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13368 PF00314 Thaumatin 1.10E-80 CL0293 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo16g00082 - - jre:108997718 452.595