Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00085 ATGGTTACTGGCTGGCGAAGAGCATTTTGCACTACTATTTCTCGAGACCCAGAATCCGATAATTCAGAGAAGAACGAGAGAAGCTCTAGTCCTAACCCTAGTCCGAGAAGCTGCGTGAGATTACGATTCTTCGCCAGTGGAAGCAACCCATCCACGCCACGGTCGCAGCTATCTCCGCTGCTCTCGAGTCCCACCTTGCGGTGTCGAACGAAGTCTCAGGAAGCCATTCAAACGCCAAATGCTACTGCTAAGACCCAGAGAATAGCTTTTGGCTCGAACCCTTCTTCACCTCGATCTCCTCTAAAGCTGTCTCTTTTCAAAAGCAGCTTCAAGTTCAGAAGTAGCTGCGGAATCTGTCAGAACAGCGTGAAAACTGGTCAAGGGACAGCCATCTACACGGCGGAGTGTGCTCATGCCTTTCATTTTCCTTGCATAGCAGCCTATGTGGGCAAAAATAACACTCTCGTTTGCCCAGTTTGTAACATCACCTGGAAAGACGTTCCGTTGCTCTCCGTCCACAAAAACGCCGTCTTTAAATCGCCGGTAGACCCGGAAGAAGTGGTTGTCTATCCGAACATCGCAGAATGCAAAAAAGAAGATAAAAACGTGAAAGATTCTTCTCCAAGAGCGTACAAAATCAACCGCAACCAAGTAGAGCGGCAGCGAAATAGACAGACCCCCTACGATGACGACGAGCCTCTTTTGTCTCCAACCTCTGGTGGTCGGATAATCCCGATTCCGGAGGCTGACGAAAACGACGACGAAGAGAATGTCGACGTGGAAGAGTTTCAGGGATTCTTCATTGATCCCAACACTTTTTCTTCAATCAAATCAAATCGAGGCGAGTCAGATATTAGCCTGAGGGAGTTGAGGAGCAACGTACAAGTTAGATTTCTTCCTGAATCAGCTCTACTATCAACTTGCCATGGCAACGAAACTCACGTCGTTGCTTTGAAAGTGAAAGCACCTCCGCCGCCTTCTTCTCGCAGCAGCATAACCTCTCCACTCCTACAACCTTCGCACAGAGCGCCCATCGATTTAGTGACGGTGCTTGATGTAAGTGGAAGCATGAGTGGCGCTAAGTTGCTTATGCTGAAGCGCGCTATGCGCTTGGTGATTTCATCTCTCTGCTCGTCAGATCGCCTTTCCATCATCGCTTTCTGTGCTACTACAAAGCGTTTATTGCCTCTGAAGAGAATGACCTTTTCAGGTCAGTCGGCTGCCACGAAAATAGTCGAGAGGCTCGTTTGTGGTCAAGGTACGAGCGTTGGGGAAGCCTTGAGAAAGGCTGCCAGAGTGCTAGAAGATCGAAAGGATAGGAATCCAGTTGCCAGTATCATCCTTTTGTCAGACGGTCAAGATGGAAGGGTCGATAACAAGGGGAGAACCCAACGGCGAGAGATGAGGTGGAGTGAGTCTTCCACTCGATTCGCTCATATTGAGATTCCTGTTCATGCGTTTGGGTTCTGCGAACACGGGGGGCGATACACAAACGAGCCGGCAGAGGAGGCTTTTGCAAAATGCATTGGTGGTTTATTGAGTGTTGTGGTTCAGGACCTAAGGATTCAACTAAGTTTTCAACCCGGATCATCTCCGGCGGAGATCTCCGCCATTTATTCCGGCAATGGAAGACCCACCATCTGTAACTCCGGTTCTGTGCGGCTCGGAGATTTGTATGGCGAGGAAGAGAGAGAGTTAATGGTGGAGCTAAAACTTCCATCTTACGCCGTTGACTCCAAGCGCGTGATGTCCGTACAGTGCCTTTACAAAGACCCTTTGACGCAAGAGGTAGTTTACGGCAAAGAACAAGGCCTTGTCATACCTCGTCTCCACTCCGTTCGAACGTCCGCGCCGAAATTTGAGCGCTTGAGACATTTATTCATCACCACTCGTGCTGTGGCGGAAGCACGGAGAGCAATCGAGCACGACGACTATACGAGTGCCCACCACCTCTTGGCGTCGGCTCGCGCTCTCCTCATGCAATCGAGCTCCATATCTCCCGACGAATACATTCGACCTTTACAAGCGGAGCTAGCAGAGCTTCAATGGCGAAGGCAGCAAATTACGAACCACCGGAGAAGAGTAACCGATCGGGACACAACAGGAAGTTTAGTGCAGCAAAACGATGAGCAGTTAACGCCTACATCGGCTTGGAGAGCGGCTGAGAAGCTGGCTAAGGTAGCCATGATGAAGAAGTCGTTAACCAGTAGAGTCAGCGACTTACACGGCTTCGAAAACGCTAGATTTTAA 2250 49.82 MVTGWRRAFCTTISRDPESDNSEKNERSSSPNPSPRSCVRLRFFASGSNPSTPRSQLSPLLSSPTLRCRTKSQEAIQTPNATAKTQRIAFGSNPSSPRSPLKLSLFKSSFKFRSSCGICQNSVKTGQGTAIYTAECAHAFHFPCIAAYVGKNNTLVCPVCNITWKDVPLLSVHKNAVFKSPVDPEEVVVYPNIAECKKEDKNVKDSSPRAYKINRNQVERQRNRQTPYDDDEPLLSPTSGGRIIPIPEADENDDEENVDVEEFQGFFIDPNTFSSIKSNRGESDISLRELRSNVQVRFLPESALLSTCHGNETHVVALKVKAPPPPSSRSSITSPLLQPSHRAPIDLVTVLDVSGSMSGAKLLMLKRAMRLVISSLCSSDRLSIIAFCATTKRLLPLKRMTFSGQSAATKIVERLVCGQGTSVGEALRKAARVLEDRKDRNPVASIILLSDGQDGRVDNKGRTQRREMRWSESSTRFAHIEIPVHAFGFCEHGGRYTNEPAEEAFAKCIGGLLSVVVQDLRIQLSFQPGSSPAEISAIYSGNGRPTICNSGSVRLGDLYGEEERELMVELKLPSYAVDSKRVMSVQCLYKDPLTQEVVYGKEQGLVIPRLHSVRTSAPKFERLRHLFITTRAVAEARRAIEHDDYTSAHHLLASARALLMQSSSISPDEYIRPLQAELAELQWRRQQITNHRRRVTDRDTTGSLVQQNDEQLTPTSAWRAAEKLAKVAMMKKSLTSRVSDLHGFENARF 749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 653072 655404 - BLOR15906 Blo17g00085 72473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00085 749 Pfam Ring finger domain 115 161 IPR001841 -
Blo17g00085 749 PANTHER E3 UBIQUITIN-PROTEIN LIGASE WAV3 3 749 - -
Blo17g00085 749 MobiDBLite consensus disorder prediction 692 711 - -
Blo17g00085 749 CDD vWA_C3HC4_type 345 517 - -
Blo17g00085 749 CDD RING-H2 116 161 - -
Blo17g00085 749 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 749 - -
Blo17g00085 749 SUPERFAMILY RING/U-box 110 166 - -
Blo17g00085 749 MobiDBLite consensus disorder prediction 215 229 - -
Blo17g00085 749 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 170 IPR013083 -
Blo17g00085 749 MobiDBLite consensus disorder prediction 200 254 - -
Blo17g00085 749 Pfam von Willebrand factor type A domain 346 489 IPR002035 -
Blo17g00085 749 SMART VWA_4 344 525 IPR002035 -
Blo17g00085 749 ProSiteProfiles Zinc finger RING-type profile. 116 161 IPR001841 -
Blo17g00085 749 SMART ring_2 116 160 IPR001841 -
Blo17g00085 749 ProSiteProfiles VWFA domain profile. 346 489 IPR002035 -
Blo17g00085 749 Gene3D von Willebrand factor, type A domain 346 516 IPR036465 -
Blo17g00085 749 MobiDBLite consensus disorder prediction 72 99 - -
Blo17g00085 749 SUPERFAMILY vWA-like 344 521 IPR036465 -
Blo17g00085 749 MobiDBLite consensus disorder prediction 11 38 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g01789 Blo17g00085 CCT
Blo17g00085 Blo18g00728 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01789 Blo-Chr1:57620563 Blo17g00085 Blo-Chr17:653072 0 dispersed
Blo04g00067 Blo-Chr4:581498 Blo17g00085 Blo-Chr17:653072 4.35E-80 dispersed
Blo13g00926 Blo-Chr13:31731829 Blo17g00085 Blo-Chr17:653072 1.29E-80 dispersed
Blo17g00085 Blo-Chr17:653072 Blo14g00185 Blo-Chr14:1479277 5.59E-15 dispersed
Blo17g00085 Blo-Chr17:653072 Blo18g00095 Blo-Chr18:795748 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00085 - - cpap:110809457 827.009