Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00125 ATGGCTTTCGCAGTGGATTTCTGTGACTGTGGAGTAGCTCAGTCAGACCCTTCTGGGTGTGAGCTAATGGACGCACTCGAACCTTTTATGAAGAGTGATTCTTCTTCAACCTCTTCTCGGCTTGCGTCTTCTTCTTCTTCCTCTTTTCCTACCCTCCTTTCCTGCTTTTCCCCCAACCAAACATACCCACATGGGTCGTCTTCTTCCATCACCCAATCGTTTACAGAGCACTACTCAACCCAATGCCCAGACTACCTTTATGTTGAGCAGCCATCTTCGAACGAGCTCAACGGCCTTAGACAAATCCACCAGAATCAAAATGAAACCCAGAAACCTTGGGGAACGATTGACCAGACCACTTCTTTCTGTCCCAAACCCACCAAGATTTACAGAGGAGTGAGACAGAGGCATTGGGGAAAATGGGTCGCTGAGATTCGTCTGCCAAAGAATCGCGCTCGGCTGTGGCTCGGCACCTTTGACACTGCAGACGAAGCAGCGATGGCGTATGATAGGGCCGCTTATAAGCTCAGAGGTGACTCTGCGAGACTCAATTTGCCTCACCTTAAACATCACTGTGGGGAGCATGACATTCTTTATTCATCAGTGGATGCGAAGCTCCAAGCAATTCATCAGAACTTGGCCAATTCGCGGAAACAGGGGAAGAAGGAGAAAACCGCGGATTTAAGAGGAAAATCCAAGTCCCAACAGGCGATAACTGATGCAGAGAGTACCCAAATAGTAGAAATTGGATCAAATGGTTTTGAGCATTACTCCATAGCTATGGCGGAGAGTGAAAATAAATGTGGAGGATCTTCTTCCCCATTTTCCGATCTTACTCGCTCAAACTCACCATGTTGTCAGAATCAGTCTTCGGAGAATTTCATGTTGCAGAATCACCCTCCAGAGATTGATCAGAACTCTGTTTTCCCCTGA 933 47.37 MAFAVDFCDCGVAQSDPSGCELMDALEPFMKSDSSSTSSRLASSSSSSFPTLLSCFSPNQTYPHGSSSSITQSFTEHYSTQCPDYLYVEQPSSNELNGLRQIHQNQNETQKPWGTIDQTTSFCPKPTKIYRGVRQRHWGKWVAEIRLPKNRARLWLGTFDTADEAAMAYDRAAYKLRGDSARLNLPHLKHHCGEHDILYSSVDAKLQAIHQNLANSRKQGKKEKTADLRGKSKSQQAITDAESTQIVEIGSNGFEHYSIAMAESENKCGGSSSPFSDLTRSNSPCCQNQSSENFMLQNHPPEIDQNSVFP 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1158138 1159070 - BLOR15946 Blo17g00125 72513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00125 310 Pfam AP2 domain 130 178 IPR001471 GO:0003700|GO:0006355
Blo17g00125 310 MobiDBLite consensus disorder prediction 216 230 - -
Blo17g00125 310 SUPERFAMILY DNA-binding domain 129 187 IPR016177 GO:0003677
Blo17g00125 310 MobiDBLite consensus disorder prediction 265 310 - -
Blo17g00125 310 PRINTS Ethylene responsive element binding protein signature 152 168 IPR001471 GO:0003700|GO:0006355
Blo17g00125 310 PRINTS Ethylene responsive element binding protein signature 130 141 IPR001471 GO:0003700|GO:0006355
Blo17g00125 310 ProSiteProfiles AP2/ERF domain profile. 129 186 IPR001471 GO:0003700|GO:0006355
Blo17g00125 310 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 304 - -
Blo17g00125 310 SMART rav1_2 129 192 IPR001471 GO:0003700|GO:0006355
Blo17g00125 310 MobiDBLite consensus disorder prediction 214 241 - -
Blo17g00125 310 CDD AP2 128 188 IPR001471 GO:0003700|GO:0006355
Blo17g00125 310 Gene3D AP2/ERF domain 129 187 IPR036955 GO:0003700|GO:0006355
Blo17g00125 310 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 304 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo12g00700 Blo17g00125 CCT
Blo17g00125 Blo18g00138 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00224 Blo-Chr4:1729127 Blo17g00125 Blo-Chr17:1158138 5.81E-22 dispersed
Blo17g00125 Blo-Chr17:1158138 Blo01g00266 Blo-Chr1:3411639 4.42E-24 dispersed
Blo11g00041 Blo-Chr11:335156 Blo17g00125 Blo-Chr17:1158138 2.30E-61 wgd
Blo12g00700 Blo-Chr12:25285115 Blo17g00125 Blo-Chr17:1158138 1.67E-65 wgd
Blo17g00125 Blo-Chr17:1158138 Blo18g00138 Blo-Chr18:1285485 2.18E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13492 PF00847 AP2 3.80E-14 CL0081 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00125 K09286 - qsu:112038037 214.157